ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.5.5

Subclass Accession number: 8343
Subclass: 3.5.5

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 6.4 +/- 8.9
Average RMSD (Å) : 1.100 +/- 0.346

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XXchXXX
(φψ)-conformation:	aalbpbb

Pattern:	x	[DNQ]	[EG]	[AI]	x	x	[AIK]	x	x	[AIY]	[AKN]	[KQR]	[EKL]	[CIV]	[AFL]	[DE]	[AKV]	x	[GK]	[ILV]	[KPT]	[ATV]	[KLT]	[LVY]	[GV]	[AVY]
Conservation:	-0.916	0.926	0.769	0.546	-1.161	-0.425	-1.038	-1.529	-1.038	-0.547	-0.302	1.417	-0.670	0.926	-0.425	2.762	-0.547	-0.547	1.119	1.539	-0.056	0.189	-0.670	0.189	-0.207	-0.302

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1igw_B_206	1igw	B	206	231	TQEAIQKLVAARLCADVTGVPTLLVA	HHHHHHHHHHHHHHHHHHT---EEEE	aaaaaaaaaaaaaaaaaavbwpxbbx
1im4_A_119	1im4	A	120	145	ENGIELARKIKQEILEKEKITVTVGV	HHHHHHHHHHHHHHHHHH---EEEEE	aaaaaaaaaaaaaaaaaavbxbbbbb
1j1u_A_79	1j1u	A	79	104	LDEIRKIGDYNKKVFEAMGLKAKYVY	HHHHHHHHHHHHHHHHHTT---EEEE	aaaaaaaaaaaaaaaaaavbxbxxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1igw_B_206	1igw	B	HGMERCURY (II) ION	Q - 207
1igw_B_206	1igw	B	HGMERCURY (II) ION	E - 208
1igw_B_206	1igw	B	HGMERCURY (II) ION	L - 218
1igw_B_206	1igw	B	HGMERCURY (II) ION	C - 219
1igw_B_206	1igw	B	HGMERCURY (II) ION	A - 220
1igw_B_206	1igw	B	HGMERCURY (II) ION	V - 222
1igw_B_206	1igw	B	HGMERCURY (II) ION	T - 223
1igw_B_206	1igw	B	MO3MAGNESIUM ION, 3 WATERS COORDINATED	R - 232
1igw_B_206	1igw	B	PYRPYRUVIC ACID	R - 232

Clusters included in this Subclass