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Information on SUBCLASS 3.6.1
Subclass Accession number: 8344
Subclass: 3.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 56

Average sequence ID (%) : 12.0 +/- 13.9
Average RMSD (Å) : 0.845 +/- 0.233

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXphX
(φψ)-conformation: aabaabb
Pattern: xxxx[adeknqrst]x[deknprs][dehknrstw][acfiklmtv]x[acfgilvwy]x
Conservation:-0.611-0.372-0.5990.2320.128-0.8002.4571.0990.673-0.843-0.474-0.888
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0i_*_1671a0i   -180191LLQEYFPEIEWQHHHHH-TTSEEEaaaaabaaxxxb
1azw_A_2711azw   A276287DLHKAWPKAQLQHHHHH-TTSEEEaaaaabaaxxxb
1bd3_A_221bd3   A2838DIITRFPNVVL.HHHHH-TTEEE.aaaaabaabbx.
1bgv_A_3521bgv   A356367RFLMQQPNMVVAHHHHH-TT-EEEaaaaaxaaxbbb
1bob_*_2311bob   -241252QSWLEDKSITEIHHHHH-TTEEEEaaaaaxaaxabb
1c7k_A_151c7k   A2435IWNSSVRNVQLRHHHHH-SSEEEEaaaaabaabbbb
1chu_A_1451chu   A146157SKALNHPNIRVLHHHHH-TTEEEEaaaaaxaabbbx
1cjc_A_161cjc   A2435HLLKHHSRAHVDHHHHH-SS-EEEaaaaabaapbbb
1cqx_A_3091cqx   A316327EAAKTYENLDLFHHHHH-TTEEEEaaaaaxaabbbb
1dhn_*_731dhn   -8394RINSQYNRVMETHHHHH-TTEEEEaaaaabaaxabb
1doz_A_541doz   A7081HLNEIQDEITFKHHHHH-SSEEEEaaaaabaabbbb
1egz_A_1061egz   A118129RKYGNKPNVIYEHHHTTSTTEEEEaaaaaxaaxbbb
1ek6_A_1561ek6   A170181DLCQADKTWNAVHHHHH-TT-EEEaaaaabaaxbbb
1eua_A_531eua   A5970AIAKEVPEAIVGHHHHH-TTSEEEaaaaabaabbxb
1feh_A_2111feh   A215226KNALNAPEKHVIHHHHH-TT-EEEaaaaaxaaxxxx
1fo8_A_2201fo8   A229240PLLKADPSLWCVHHHHH-TTEEEEaaaaabaababb
1fp2_A_2011fp2   A205216IICETFPKLKCIHHHHH-TT-EEEaaaaabaaxxbb
1fxp_A_10161fxp   A10281039RLSEKFKEVEFVHHHHH-TTEEEEaaaaaxaabbxb
1gpe_A_341gpe   A4152AKLTENPKIKVLHHHHTSTT--EEaaaaaxaaxxbb
1gpu_A_5041gpu   A512523KNSLESKHTPSIHHHHH-SS--EEaaaaaxaabwbb
1hkv_A_1911hkv   A197208RRVFATDHLRLVHHHHH-SSEEEEaaaaabaabbxa
1i1w_A_2451i1w   A253264NACLNVSSCVGIHHHHH-TTEEEEaaaaabaaxaeb
1i8t_A_3161i8t   A327337ELASREDKVIF.HHHHH-TTEEE.aaaaaxaabbx.
1iu8_A_181iu8   A2536ALSERIPEVVGEHHHHH-TTEEEEaaaaabaaxbbb
1j5s_A_3471j5s   A352362TIARAFPNVYV.HHHHH-TTEEE.aaaaabaabbx.
1jag_A_511jag   A5768LLTKTYPEWHVAHHHHH-TTSEEEaaaaabaapbbx
1jz7_A_5491jz7   A554565QAFRQYPRLQGGHHHHH-TTEEEEaaaaabaaxaee
1k4m_A_531k4m   A6272LAIADKPLFTL.HHHTT-TTEEE.aaaaabaaxbb.
1kam_A_531kam   A6272LAIQSNPSFKL.HHHTT-TTEEE.aaaaabaaxbb.
1kep_A_151kep   A2334YVYNNHPDVHVTHHHHH-TTSEEEaaaaabaaxxbb
1kf6_A_141kf6   A2233AAAQANPNAKIAHHHHH-TT--EEaaaaabaaxbbx
1krh_A_2561krh   A261272ALQQKLPWFEYRHHHHH-TTEEEEaaaaabaabbbb
1lam_*_1801lam   -190201NLKSASIKTDVFHHHHH-SSEEEEaaaaabaabbbb
1mla_*_2801mla   -284295LTKRIVDTLTASHHHHH-TT-EEEaaaaabaaxbbb
1mu2_A_1561mu2   A170181PFRKANKDVIIIHHHHH-TTSEEEaaaaabaaxxbb
1ni4_B_151ni4   B1526EELERDEKVFLLHHHHH-TTEEEEaaaaabaaxbbb
1o5k_A_1441o5k   A149159RIAADLKNVVG.HHHHH-TTEEE.aaaaabaaxab.
1o7d_A_971o7d   A106117SSLLANPTRRFIHHHHH-TT--EEaaaaabaapbbb
1oaa_*_1691oaa   -184195VLAAEEPSVRVLHHHHH-TTEEEEaaaaabaabxbb
1onw_A_1481onw   A150160KDVAIIDRVIG.HHHHH-TTEEE.aaaaaxaaxae.
1ovm_A_321ovm   A3647DHVIDSPDICWVHHHHH-SS-EEEaaaaaxaabbxb
1php_*_3291php   -336347EALAEALDTYSVHHHHH-TT-EEEaaaaaxaabxbb
1pja_A_1121pja   A119130ALLSVMDDHNVDHHHHH-TT--EEaaaaabaaxaxa
1qfj_A_1481qfj   A153164ALSLKHPGLQVVHHHHH-TTEEEEaaaaabaaxbbb
1qtr_A_2731qtr   A278289DLAKAWPEAELHHHHHH-TTSEEEaaaaabaaxxxb
1req_A_2141req   A227236YTSANMPKWN..HHHHH-TTEE..aaaaabaaxx..
1sft_A_1421sft   A150161ALIERHPHFVLEHHHHHSTTEEEEaaaaaxaaxbxa
1thg_*_4291thg   -434445VMLSATKDVNRWHHHHH-TTS-EEaaaaaxaabxbb
1udb_*_1481udb   -162173DLQKAQPDWSIAHHHHHSTT-EEEaaaaabaaxbbx
1vgv_A_181vgv   A2132HALAKDPFFEAKHHHHHSTT--EEaaaaaxaaxbbb
1xyz_A_7651xyz   A781792KICLANPNCNTFHHHHH-TTEEEEaaaaabaababb
2ayq_A_1952ayq   A206217ETAKKYPDVELSHHHHH-TTSEEEaaaaabaabxxb
2bce_*_3942bce   -403414QHKSHAKSANTYHHHHH-SS--EEaaaaapaabxbb
2nap_A_1822nap   A190201RRKQVEPGVKIIHHHHH-TT-EEEaaaaabaapbbb
2plc_*_2112plc   -223234YQASKADNKLFLHHHHH-SSSEEEaaaaaxNabxbb
7a3h_A_1127a3h   A124135ELYGDYPNVIYEHHHTT-TTEEEEaaaaabaaxbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bob_*_2311bob   *     ACOACETYL COENZYME *A H - 231
1bob_*_2311bob   *     ACOACETYL COENZYME *A G - 232
1bob_*_2311bob   *     ACOACETYL COENZYME *A S - 233
1bob_*_2311bob   *     ACOACETYL COENZYME *A V - 254
1c7k_A_151c7k   A     CACALCIUM ION E - 17
1c7k_A_151c7k   A     CACALCIUM ION N - 20
1cjc_A_161cjc   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 16
1cjc_A_161cjc   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 17
1cjc_A_161cjc   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 18
1cjc_A_161cjc   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 37
1egz_A_1061egz   A     CACALCIUM ION Y - 120
1egz_A_1061egz   A     CACALCIUM ION G - 121
1egz_A_1061egz   A     CACALCIUM ION N - 122
1egz_A_1061egz   A     CACALCIUM ION K - 123
1egz_A_1061egz   A     CACALCIUM ION Y - 128
1ek6_A_1561ek6   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Y - 157
1ek6_A_1561ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE Y - 157
1ek6_A_1561ek6   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE K - 161
1ek6_A_1561ek6   A     MGMAGNESIUM ION Q - 173
1ek6_A_1561ek6   A     MGMAGNESIUM ION A - 174
1ek6_A_1561ek6   A     MGMAGNESIUM ION K - 176
1ek6_A_1561ek6   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Y - 185
1ek6_A_1561ek6   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE Y - 185
1eua_A_531eua   A     PYRPYRUVIC ACID A - 71
1eua_A_531eua   A     PYRPYRUVIC ACID G - 72
1feh_A_2111feh   A     HC12 IRON/2 SULFUR/5 CARBONYL/2 WATER INORGANIC CLUSTER M - 229
1fo8_A_2201fo8   A     MMCMETHYL MERCURY ION F - 220
1fp2_A_2011fp2   A     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 202
1fp2_A_2011fp2   A     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 218
1fp2_A_2011fp2   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 219
1fxp_A_10161fxp   A     CDCADMIUM ION K - 1041
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 34
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 35
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 36
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 54
1gpe_A_341gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 55
1hkv_A_1911hkv   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 211
1i1w_A_2451i1w   A     GOLGLYCEROL N - 253
1i1w_A_2451i1w   A     GOLGLYCEROL A - 254
1i1w_A_2451i1w   A     GOLGLYCEROL L - 256
1i1w_A_2451i1w   A     GOLGLYCEROL N - 257
1jag_A_511jag   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 51
1jag_A_511jag   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 52
1jag_A_511jag   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 53
1jz7_A_5491jz7   A     DMSDIMETHYL SULFOXIDE W - 553
1jz7_A_5491jz7   A     DMSDIMETHYL SULFOXIDE R - 557
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 15
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 16
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 17
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 36
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 37
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 14
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 15
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 16
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 35
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 36
1mu2_A_1561mu2   A     GOLGLYCEROL I - 179
1mu2_A_1561mu2   A     GOLGLYCEROL I - 181
1ni4_B_151ni4   B     MSESELENOMETHIONINE E - 15
1ni4_B_151ni4   B     MSESELENOMETHIONINE E - 16
1ni4_B_151ni4   B     MSESELENOMETHIONINE L - 17
1ni4_B_151ni4   B     MSESELENOMETHIONINE E - 18
1ni4_B_151ni4   B     MSESELENOMETHIONINE V - 23
1ni4_B_151ni4   B     MSESELENOMETHIONINE L - 25
1o5k_A_1441o5k   A     MCLNZ-(1-CARBOXYETHYL)-LYSINE G - 159
1o5k_A_1441o5k   A     CACALCIUM ION G - 159
1oaa_*_1691oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 171
1oaa_*_1691oaa   *     OAAOXALOACETATE ION Y - 171
1oaa_*_1691oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 175
1oaa_*_1691oaa   *     OAAOXALOACETATE ION K - 175
1oaa_*_1691oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 178
1oaa_*_1691oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 198
1onw_A_1481onw   A     EGLETHYLENE GLYCOL V - 152
1onw_A_1481onw   A     EGLETHYLENE GLYCOL A - 153
1onw_A_1481onw   A     EGLETHYLENE GLYCOL I - 154
1onw_A_1481onw   A     KCXLYSINE NZ-CARBOXYLIC ACID G - 160
1pja_A_1121pja   A     GOLGLYCEROL Q - 112
1req_A_2141req   A     DCADESULFO-COENZYME A K - 234
1req_A_2141req   A     DCADESULFO-COENZYME A N - 236
1sft_A_1421sft   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 164
1udb_*_1481udb   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 149
1udb_*_1481udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE Y - 149
1udb_*_1481udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE G - 150
1udb_*_1481udb   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 153
1udb_*_1481udb   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 177
1udb_*_1481udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE Y - 177
1vgv_A_181vgv   A     MSESELENOMETHIONINE P - 18
1vgv_A_181vgv   A     MSESELENOMETHIONINE L - 19
1vgv_A_181vgv   A     MSESELENOMETHIONINE V - 20
1vgv_A_181vgv   A     MSESELENOMETHIONINE H - 21
1vgv_A_181vgv   A     MSESELENOMETHIONINE F - 28
1vgv_A_181vgv   A     MSESELENOMETHIONINE F - 29
1vgv_A_181vgv   A     MSESELENOMETHIONINE E - 30
1vgv_A_181vgv   A     MSESELENOMETHIONINE A - 31
2nap_A_1822nap   A     FS4IRON/SULFUR CLUSTER P - 182
2nap_A_1822nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE P - 182
2nap_A_1822nap   A     FS4IRON/SULFUR CLUSTER V - 183
2nap_A_1822nap   A     FS4IRON/SULFUR CLUSTER L - 184
2nap_A_1822nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE A - 203

Clusters included in this Subclass
CLUSTER: HE.2.24
CLUSTER: HE.2.85
CLUSTER: HE.3.108
CLUSTER: HE.3.26
CLUSTER: HE.3.84
CLUSTER: HE.4.30
CLUSTER: HE.4.34
CLUSTER: HE.5.12