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Information on SUBCLASS 3.9.4
Subclass Accession number: 8361
Subclass: 3.9.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 16.7 +/- 17.2
Average RMSD (Å) : 0.620 +/- 0.084

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: XhXcpph
(φψ)-conformation: aaplpbb
Pattern: [pr]xx[AFLV][AEKL][DGN][HKRY]x[LV]
Conservation:-0.401-0.261-0.620-0.221-0.6271.3930.365-1.3631.735
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ao0_A_3331ao0   A333341RGVVEGKRVHHHHTT-EEaaaapvxbb
1ejx_B_20531ejx   B20532061RQQAAGYRLHHHHTTEEEaaaapvbbx
1mkh_A_541mkh   A5462PEELLNRYVHHHHTT-EEaaaaxvxxb
1or8_A_661or8   A6674RHLFKDKVVHHHHTT-EEaaaapvxbb
2aps_A_1302aps   A130138LDEVKGHSLHHHHTTEEEaaaaxvbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ao0_A_3331ao0   A     5GPGUANOSINE-5'-MONOPHOSPHATE D - 345
1ao0_A_3331ao0   A     ADPADENOSINE-5'-DIPHOSPHATE D - 345
1ao0_A_3331ao0   A     MGMAGNESIUM ION D - 345
1or8_A_661or8   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 76
1or8_A_661or8   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 77
2aps_A_1302aps   A     CUCOPPER (II) ION M - 139
2aps_A_1302aps   A     CUCOPPER (II) ION I - 140
2aps_A_1302aps   A     CUCOPPER (II) ION H - 141
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2aps_A_1302aps   A ACTCOPPER AND ZINC ARE LIGATED BY THREE CONSERVED HISTIDINES EACH IN THE ACTIVE SITE OF EACH SUBUNIT.H - 141

Clusters included in this Subclass
CLUSTER: HE.2.69