Information on SUBCLASS 3.9.4 |
Subclass Accession number: 8361
Subclass: 3.9.4 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 16.7 +/- 17.2 Average RMSD (Å) : 0.620 +/- 0.084 Consensus geometry
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Consensus Sequence: | XhXcpph |
(φψ)-conformation: | aaplpbb |
Pattern: | [pr] | x | x | [AFLV] | [AEKL] | [DGN] | [HKRY] | x | [LV] |
Conservation: | -0.401 | -0.261 | -0.620 | -0.221 | -0.627 | 1.393 | 0.365 | -1.363 | 1.735 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ao0_A_333 | 1ao0 | A | 333 | 341 | RGVVEGKRV | HHHHTT-EE | aaaapvxbb |
1ejx_B_2053 | 1ejx | B | 2053 | 2061 | RQQAAGYRL | HHHHTTEEE | aaaapvbbx |
1mkh_A_54 | 1mkh | A | 54 | 62 | PEELLNRYV | HHHHTT-EE | aaaaxvxxb |
1or8_A_66 | 1or8 | A | 66 | 74 | RHLFKDKVV | HHHHTT-EE | aaaapvxbb |
2aps_A_130 | 2aps | A | 130 | 138 | LDEVKGHSL | HHHHTTEEE | aaaaxvbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ao0_A_333 | 1ao0 | A | 5GPGUANOSINE-5'-MONOPHOSPHATE | D - 345 |
1ao0_A_333 | 1ao0 | A | ADPADENOSINE-5'-DIPHOSPHATE | D - 345 |
1ao0_A_333 | 1ao0 | A | MGMAGNESIUM ION | D - 345 |
1or8_A_66 | 1or8 | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | D - 76 |
1or8_A_66 | 1or8 | A | SAHS-ADENOSYL-L-HOMOCYSTEINE | V - 77 |
2aps_A_130 | 2aps | A | CUCOPPER (II) ION | M - 139 |
2aps_A_130 | 2aps | A | CUCOPPER (II) ION | I - 140 |
2aps_A_130 | 2aps | A | CUCOPPER (II) ION | H - 141 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
2aps_A_130 | 2aps | A | ACTCOPPER AND ZINC ARE LIGATED BY THREE CONSERVED HISTIDINES EACH IN THE ACTIVE SITE OF EACH SUBUNIT. | H - 141 |
Clusters included in this Subclass |
CLUSTER: HE.2.69 |