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PDB code:

Information on SUBCLASS 3.25.1

Subclass Accession number: 8391 Subclass: 3.25.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 3 Average sequence ID (%) : 24.6 +/- 22.5 Average RMSD (Å) : 0.767 +/- 0.289 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dqw_A_16	1dqw	A	17	35	VAAKLFNIMHEKQTNLCAS	HHHHHHHHHHHHT--EEEE	aaaaaaaaaaaalbaxbxb
1gve_B_84	1gve	B	87	105	VRFQLETSLKRLQCPRVDL	HHHHHHHHHHHHT-S-EEE	aaaaaaaaaaaalbabbab
1mzr_A_86	1mzr	A	86	104	PREALLDSLKKLQLDYIDL	HHHHHHHHHHHHT-S-EEE	aaaaaaaaaaaavbabbab

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gve_B_84	1gve	B	GOLGLYCEROL	P - 84
1gve_B_84	1gve	B	GOLGLYCEROL	A - 85
1gve_B_84	1gve	B	GOLGLYCEROL	D - 86
1gve_B_84	1gve	B	GOLGLYCEROL	R - 88
1gve_B_84	1gve	B	GOLGLYCEROL	F - 89
1gve_B_84	1gve	B	GOLGLYCEROL	Q - 90
1gve_B_84	1gve	B	GOLGLYCEROL	E - 92
1gve_B_84	1gve	B	GOLGLYCEROL	T - 93
1gve_B_84	1gve	B	GOLGLYCEROL	K - 96
1gve_B_84	1gve	B	GOLGLYCEROL	R - 102
1gve_B_84	1gve	B	GOLGLYCEROL	V - 103
1gve_B_84	1gve	B	GOLGLYCEROL	D - 104
1gve_B_84	1gve	B	GOLGLYCEROL	L - 105

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gve_B_84	1gve	B	AC6GOL BINDING SITE FOR CHAIN B	P - 84
1gve_B_84	1gve	B	AC6GOL BINDING SITE FOR CHAIN B	A - 85
1gve_B_84	1gve	B	AC3GOL BINDING SITE FOR CHAIN B	R - 88
1gve_B_84	1gve	B	AC3GOL BINDING SITE FOR CHAIN B	F - 89
1gve_B_84	1gve	B	AC3GOL BINDING SITE FOR CHAIN B	E - 92
1gve_B_84	1gve	B	AC3GOL BINDING SITE FOR CHAIN B	T - 93
1gve_B_84	1gve	B	AC5GOL BINDING SITE FOR CHAIN B	R - 102
1gve_B_84	1gve	B	AC5GOL BINDING SITE FOR CHAIN B	D - 104
1gve_B_84	1gve	B	AC8GOL BINDING SITE FOR CHAIN B	L - 105

Clusters included in this Subclass

CLUSTER: HE.4.270

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