Information on SUBCLASS 4.1.2 |
Subclass Accession number: 8407
Subclass: 4.1.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 48 Average sequence ID (%) : 18.4 +/- 18.6 Average RMSD (Å) : 0.594 +/- 0.280 Consensus geometry
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Consensus Sequence: | pXXPpXXh |
(φψ)-conformation: | aabaapbb |
Pattern: | [acfilmtv] | x | x | x | x | [ekpqrst] | [adegknqrst] | x | x | [fiklmtv] | x |
Conservation: | -0.140 | 0.016 | -0.148 | -0.565 | -0.542 | 2.642 | 0.262 | -0.748 | -0.946 | 0.728 | -0.558 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1azw_A_271 | 1azw | A | 277 | 287 | LHKAWPKAQLQ | HHHH-TTSEEE | aaaabaaxxxb |
1ceo_*_147 | 1ceo | - | 160 | 170 | IREIDSTMWLY | HHHH-SS--EE | aaaabaaxxbb |
1cjc_A_16 | 1cjc | A | 25 | 35 | LLKHHSRAHVD | HHHH-SS-EEE | aaaabaapbbb |
1cl8_A_35 | 1cl8 | A | 46 | 56 | LSNEYPQLSFR | HHHH-TTS-EE | aaaabaaxbbb |
1dle_A_23 | 1dle | A | 23 | 33 | DYHKQPWQAKI | HHHH-TTEEEE | aaaabaaxbbb |
1dqa_A_657 | 1dqa | A | 671 | 681 | LHEYFPEMQIL | HHHH-TT-EEE | aaaabaaxbxa |
1edt_*_148 | 1edt | - | 156 | 166 | LRANMPDKIIS | HHHH-TTSEEE | aaaabaabxbb |
1f6k_A_170 | 1f6k | A | 176 | 186 | LKKAYPNHLIW | HHHH-TTSEEE | aaaabaaxxbb |
1ffr_A_251 | 1ffr | A | 259 | 269 | LKQAHPDLKIL | HHHH-TT-EEE | aaaabaaxxbb |
1g99_A_124 | 1g99 | A | 134 | 144 | CAEIMPGTPMV | HHHH-TTS-EE | aaaabaaxpbb |
1gte_A_618 | 1gte | A | 628 | 638 | LKADFPDNIVI | HHHH-TTSEEE | aaaabaaxxbb |
1gtk_A_130 | 1gtk | A | 136 | 146 | LAERRPDLIIR | HHHH-TTSEEE | aaaabaaxxxb |
1gzg_A_107 | 1gzg | A | 115 | 125 | LRERFPELGII | HHHH-TTSEEE | aaaabaaxxbb |
1h7n_A_111 | 1h7n | A | 119 | 129 | IREYFPELYII | HHHH-TTSEEE | aaaabaaxxbb |
1hl2_A_171 | 1hl2 | A | 177 | 187 | IRREHPDLVLY | HHHH-TT-EEE | aaaabaaxxbx |
1ig8_A_211 | 1ig8 | A | 219 | 229 | SYYTDPETKMG | HHHH-TTEEEE | aaaabaapabb |
1j0h_A_335 | 1j0h | A | 345 | 355 | VKALKPDVYIL | HHHH-TT-EEE | aaaabaaxxbb |
1jag_A_51 | 1jag | A | 58 | 68 | LTKTYPEWHVA | HHHH-TTSEEE | aaaabaapbbx |
1jbq_A_259 | 1jbq | A | 268 | 278 | LKEKCPGCRII | HHHH-TT-EEE | aaaabaaxxbb |
1jp4_A_49 | 1jp4 | A | 62 | 72 | LSRKFPKLTII | HHHH-TTSEEE | aaaabaaxxbb |
1jr1_A_281 | 1jr1 | A | 290 | 300 | MKEKYPNLQVI | HHHHSTT-EEE | aaaabaapxbb |
1jr1_B_281 | 1jr1 | B | 290 | 300 | MKEKYPNLQVI | HHHH-TTSEEE | aaaabaaxxbb |
1kep_A_15 | 1kep | A | 24 | 34 | VYNNHPDVHVT | HHHH-TTSEEE | aaaabaaxxbb |
1kf6_A_14 | 1kf6 | A | 23 | 33 | AAQANPNAKIA | HHHH-TT--EE | aaaabaaxbbx |
1l6s_A_97 | 1l6s | A | 105 | 115 | CKQTVPEMIVM | HHHH-TTSEEE | aaaabaaxxxb |
1l6w_A_142 | 1l6w | A | 153 | 163 | LKMHAPQAKVL | HHHH-TT-EEE | aaaabaaxbxb |
1lhp_A_88 | 1lhp | A | 101 | 111 | LKQQNPRLVYV | HHHH-TT-EEE | aaaabaaxbbx |
1ll7_A_107 | 1ll7 | A | 115 | 125 | LKKNNRNLKTL | HHHH-TT-EEE | aaaabaaxbbb |
1m0d_A_72 | 1m0d | A | 81 | 91 | IREQHPELDIR | HHHH-TT--EE | aaaabaaxbbb |
1m6i_A_141 | 1m6i | A | 150 | 160 | IRARDPGARVL | HHHHSTT-EEE | aaaabaapbbb |
1m6y_A_37 | 1m6y | A | 42 | 52 | ILEHCPGCRII | HHHH-TT-EEE | aaaabaaxbbb |
1mml_*_208 | 1mml | - | 210 | 220 | FRIQHPDLILL | HHHH-TTSEEE | aaaabaabbbb |
1o6b_A_102 | 1o6b | A | 106 | 116 | NRVLDESIETF | HHHH-TTSEEE | aaaabaabxbb |
1o7d_A_97 | 1o7d | A | 107 | 117 | SLLANPTRRFI | HHHH-TT--EE | aaaabaapbbb |
1ogs_A_320 | 1ogs | A | 327 | 337 | THRLFPNTMLF | HHHH-TTSEEE | aaaabaabxbb |
1p0k_A_101 | 1p0k | A | 110 | 120 | VRKENPNGLIF | HHHH-SSS-EE | aaaabaaxxbb |
1p0k_A_238 | 1p0k | A | 245 | 255 | IRSEFPASTMI | HHHH-TTSEEE | aaaabaaxxbb |
1pv8_A_100 | 1pv8 | A | 108 | 118 | LRKTFPNLLVA | HHHHSTTSEEE | aaaabaaxxbx |
1qjc_A_96 | 1qjc | A | 106 | 116 | NRHLMPELESV | HHHH-TTSEEE | aaaabaabxxb |
1udb_*_148 | 1udb | - | 163 | 173 | LQKAQPDWSIA | HHHHSTT-EEE | aaaabaaxbbx |
1vgv_A_220 | 1vgv | A | 232 | 242 | IATTHQDIQIV | HHHH-TT--EE | aaaabaabbbb |
1zpd_A_515 | 1zpd | A | 524 | 534 | VALANTDGPTL | HHHH--SS-EE | aaaaxaabxbx |
2ayq_A_195 | 2ayq | A | 207 | 217 | TAKKYPDVELS | HHHH-TTSEEE | aaaabaabxxb |
2bce_*_394 | 2bce | - | 404 | 414 | HKSHAKSANTY | HHHH-SS--EE | aaaapaabxbb |
2ebn_*_149 | 2ebn | - | 159 | 169 | TKQAMPNKLVT | HHHH-TTSEEE | aaaabaabxbb |
2plc_*_102 | 2plc | - | 112 | 122 | FLKKNPKETII | HHHHSTT--EE | aaaabaaxbbb |
2ptd_*_91 | 2ptd | - | 101 | 111 | FLKDNPSETII | HHHH-TT--EE | aaaabaaxbbb |
5rub_A_269 | 5rub | A | 275 | 285 | ARRRFPDNFLH | HHHH-TTS-EE | aaaabaabpbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gtk_A_130 | 1gtk | A | AC1DPM BINDING SITE FOR CHAIN A | R - 132 |
1gzg_A_107 | 1gzg | A | NAANA BINDING SITE FOR CHAIN A | D - 127 |
1ogs_A_320 | 1ogs | A | BC1SO4 BINDING SITE FOR CHAIN A | R - 329 |
1ogs_A_320 | 1ogs | A | AC1SO4 BINDING SITE FOR CHAIN A | E - 340 |
Clusters included in this Subclass |
CLUSTER: HE.3.24 |
CLUSTER: HE.4.22 |
CLUSTER: HE.4.225 |
CLUSTER: HE.5.6 |
CLUSTER: HE.6.38 |