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Information on SUBCLASS 4.1.6
Subclass Accession number: 8411
Subclass: 4.1.6 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 5.5 +/- 9.2
Average RMSD (Å) : 0.820 +/- 0.239

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XhXXpXpX
(φψ)-conformation: aabaappb
Pattern: [AFGKL]x[adr]x[GILM][AFTV][EKPT][DEGNT]xxx
Conservation:-1.440-0.067-0.727-0.662-0.3090.9731.7521.0630.0940.521-1.197
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1abr_A_941abr   A94104ASDYLFTGTDQHHHHSSTTSEEaaaaabaabxx
1f07_A_421f07   A4858LIAEGTETIKLHHHHT-SS-EEaaaaabaaxxb
1luc_B_551luc   B6171FLLGMTKNAKVHHHHH-SSSEEaaaaabaaxxb
1o20_A_2901o20   A291301KTREIVPDVVPHHHHHSTTSEEaaaaabaaxpx
1zpd_A_4181zpd   A424434GYAVGAPERRNHHHHH-TTSEEaaaaabaaxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1zpd_A_4181zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER V - 438
1zpd_A_4181zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER G - 439
1zpd_A_4181zpd   A     MGMAGNESIUM ION G - 439

Clusters included in this Subclass
CLUSTER: HE.5.144