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Information on SUBCLASS 4.2.3
Subclass Accession number: 8419
Subclass: 4.2.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 16.4 +/- 16.8
Average RMSD (Å) : 0.730 +/- 0.184

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpGXhpXh
(φψ)-conformation: aalababb
Pattern: xx[ailmv]x[ehknqrst][DEGNS]x[acfilvy][dekqrst]x[afgilmvy][afilvwy]
Conservation:-0.708-0.6790.748-0.787-0.1902.617-0.635-0.2880.574-1.0370.1200.264
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa6_*_3861aa6   -388399HRAAHGEVRAAYHHHHTTS--EEEaaaaavababbb
1b93_A_701b93   A7687ALISEGKIDVLIHHHHTT---EEEaaaaavababbb
1c30_A_10011c30   A10031014DRIKNGEYTYIIHHHHTT--SEEEaaaaavababbb
1cdo_A_3551cdo   A360371DLMKHGKCIRTVHHHHTT--SEEEaaaaalababbb
1chd_*_3141chd   -317328EAINMGGVSEVVHHHHTT--SEEEaaaaavababbb
1cp2_A_1341cp2   A134145MPIREGKAQEIYHHHHTTS--EEEaaaaavababbb
1dci_A_2331dci   A235246EALDSGLVSRVFHHHHHTSSSEEEaaaaavababbb
1dhs_*_1121dhs   -118129YLVQHNMVDVLVHHHHTT--SEEEaaaaalababbb
1e9y_B_3411e9y   B349359TLHDMGAFSIT.HHHHTTS--EE.aaaaavaxabb.
1ejx_C_13391ejx   C13471358VLHDLGAFSLTSHHHHTTSS-EEEaaaaavababbb
1ex7_A_1401ex7   A155166AYAETGAHDKVIHHHTTT-SSEEEaaaaavababbb
1h0h_A_4971h0h   A502513DDMFQGKIKGFFHHHHTT---EEEaaaaavababbb
1hyh_A_311hyh   A3950GLIAQGVADDYVHHHHHT--SEEEaaaaavababbb
1i0z_A_301i0z   A3849SILGKSLADELAHHHHTT--SEEEaaaaalababbb
1jqk_A_3221jqk   A322333LPILTGALEAMVHHHHTT---EEEaaaaavababbx
1ka1_A_2661ka1   A269280CLLALGLADVYLHHHHHTS-SEEEaaaaavababxb
1kqf_A_5371kqf   A542553NMMDEGKVTGYFHHHHTT---EEEaaaaavababbb
1n8f_A_301n8f   A4455HKILKGNDDRLLHHHHTTS---EEaaaaavabaxbx
1o6z_A_311o6z   A3950NIALRDIADEVVHHHHTT--SEEEaaaaalababbb
2hvm_*_1672hvm   -168179TALNTGLFDYVWHHHHTT--SEEEaaaaavaxabbb
2nap_A_3972nap   A402413EALGRGDVKCMIHHHHHTSS-EEEaaaaavababbb
3pmg_A_2693pmg   A273284ETMKSGEHDFGAHHHHTS--SEEEaaaaavaxabbb
9ldt_A_319ldt   A3950SILMKELADEIAHHHHTT--SEEEaaaaalababbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aa6_*_3861aa6   *     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE M - 401
1b93_A_701b93   A     FMTFORMIC ACID D - 71
1b93_A_701b93   A     FMTFORMIC ACID F - 88
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 362
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 365
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE C - 367
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 368
1cdo_A_3551cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 369
1cdo_A_3551cdo   A     ZNZINC ION R - 369
1dci_A_2331dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED L - 237
1dci_A_2331dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED D - 238
1dci_A_2331dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED S - 239
1dci_A_2331dci   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED G - 240
1dhs_*_1121dhs   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 130
1ex7_A_1401ex7   A     5GPGUANOSINE-5'-MONOPHOSPHATE R - 146
1h0h_A_4971h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER W - 497
1h0h_A_4971h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER W - 515
1hyh_A_311hyh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 31
1hyh_A_311hyh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 32
1hyh_A_311hyh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 33
1hyh_A_311hyh   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 52
1i0z_A_301i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Q - 30
1i0z_A_301i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 31
1i0z_A_301i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 32
1i0z_A_301i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 51
1ka1_A_2661ka1   A     A3PADENOSINE-3'-5'-DIPHOSPHATE K - 267
1ka1_A_2661ka1   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Y - 279
1ka1_A_2661ka1   A     A3PADENOSINE-3'-5'-DIPHOSPHATE R - 281
1kqf_A_5371kqf   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE Q - 555
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 31
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 52
2nap_A_3972nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE I - 414
2nap_A_3972nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE C - 415
9ldt_A_319ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 31

Clusters included in this Subclass
CLUSTER: HE.4.39
CLUSTER: HE.5.127
CLUSTER: HE.5.204
CLUSTER: HE.5.323
CLUSTER: HE.6.33