ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.2.4

Subclass Accession number: 8420
Subclass: 4.2.4

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 14

Average sequence ID (%) : 19.2 +/- 20.0
Average RMSD (Å) : 0.614 +/- 0.129

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XpGXhpXh
(φψ)-conformation:	aalababb

Pattern:	x	[aciklm]	[adegknqr]	[ehknqrst]	[GKQS]	x	[aivy]	[DRST]	[efhry]	[agiltv]	[AFILMVY]
Conservation:	-0.936	-0.183	-0.460	-0.186	2.570	-0.918	0.003	0.638	-0.715	-0.387	0.573

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c30_A_1001	1c30	A	1004	1014	RIKNGEYTYII	HHHTT--SEEE	aaaavababbb
1chd_*_314	1chd	-	318	328	AINMGGVSEVV	HHHTT--SEEE	aaaavababbb
1cs8_A_27	1cs8	A	48	58	EYREGKHSFTM	HHHTT--SEEE	aaaavababbb
1din_*_124	1din	-	132	142	VAAKGYVDRAV	HHHHT-SSEEE	aaaavababbb
1gv0_A_10	1gv0	A	19	29	LAEKQLARELV	HHHHT--SEEE	aaaalababbb
1gv1_A_10	1gv1	A	19	29	IADKKLARELV	HHHTT--SEEE	aaaalababbb
1hyh_A_31	1hyh	A	40	50	LIAQGVADDYV	HHHHT--SEEE	aaaavababbb
1hzd_A_245	1hzd	A	248	258	AKAVGLISHVL	HHHHTS-SEEE	aaaavababbb
1i0z_A_30	1i0z	A	39	49	ILGKSLADELA	HHHTT--SEEE	aaaalababbb
1ldn_A_30	1ldn	A	39	49	LMNQGIADEIV	HHHHT--SEEE	aaaavababbb
1lld_A_17	1lld	A	26	36	AAQRGIAREIV	HHHTT--SEEE	aaaalababbb
1o63_A_49	1o63	A	52	62	YLVHGVADIGF	HHHTTS-SEEE	aaaavababbb
1oyw_A_110	1oyw	A	110	120	GCRTGQIRLLY	HHHHT--SEEE	aaaavababbx
3pmg_A_269	3pmg	A	274	284	TMKSGEHDFGA	HHHTS--SEEE	aaaavaxabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1din_*_124	1din	*	CSD3-SULFINOALANINE	L - 124
1din_*_124	1din	*	CSD3-SULFINOALANINE	G - 125
1din_*_124	1din	*	CSD3-SULFINOALANINE	G - 126
1din_*_124	1din	*	CSD3-SULFINOALANINE	A - 127
1din_*_124	1din	*	CSD3-SULFINOALANINE	L - 128
1din_*_124	1din	*	CSD3-SULFINOALANINE	Y - 144
1gv0_A_10	1gv0	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 10
1gv0_A_10	1gv0	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 11
1gv0_A_10	1gv0	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 12
1gv0_A_10	1gv0	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 31
1hyh_A_31	1hyh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 31
1hyh_A_31	1hyh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 32
1hyh_A_31	1hyh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 33
1hyh_A_31	1hyh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 52
1i0z_A_30	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	Q - 30
1i0z_A_30	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	V - 31
1i0z_A_30	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 32
1i0z_A_30	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	V - 51
1ldn_A_30	1ldn	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	F - 30
1ldn_A_30	1ldn	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 31
1ldn_A_30	1ldn	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 32
1ldn_A_30	1ldn	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 51
1lld_A_17	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 17
1lld_A_17	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 18
1lld_A_17	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 19
1lld_A_17	1lld	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 38
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	G - 110
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	C - 111
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	R - 112
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	T - 113
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	G - 114
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	Q - 115
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	I - 116
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	Y - 120
1oyw_A_110	1oyw	A	MSESELENOMETHIONINE	I - 121

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gv0_A_10	1gv0	A	NAANAD BINDING SITE FOR CHAIN A	N - 10

Clusters included in this Subclass