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Information on SUBCLASS 4.2.5
Subclass Accession number: 8421
Subclass: 4.2.5 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 15.7 +/- 16.9
Average RMSD (Å) : 0.733 +/- 0.227

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpcXhpXh
(φψ)-conformation: aalababb
Pattern: xx[afilv]x[DEHRST][DGN]x[AILV][DEKQRST]x[AFILMVY][civy][afiltv]
Conservation:-1.343-1.1910.146-0.7680.3792.337-0.7781.1200.553-0.5180.294-0.022-0.208
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa6_*_3861aa6   -388400HRAAHGEVRAAYIHHHHTTS--EEEEaaaaavababbbx
1b93_A_701b93   A7688ALISEGKIDVLIFHHHHTT---EEEEaaaaavababbbb
1ddg_A_4991ddg   A504516RYVKEGVLTRIDLHHHHTTS--EEEEaaaaavaxabbbb
1dhs_*_1121dhs   -118130YLVQHNMVDVLVTHHHHTT--SEEEEaaaaalababbbb
1gnl_A_3781gnl   A383395DAVKSGAIKKFVVHHHHTTS--EEEEaaaaavababbbx
1gtk_A_631gtk   A6880VALLENRADIAVHHHHHTTS-SEEEEaaaaavababbbb
1ja1_A_5761ja1   A581593RFHKDGALTQLNVHHHHTTSSSEEEEaaaaavababbxb
1jp4_A_2211jp4   A226238IQLIEGKASAYVFHHHHTTS-SEEEEaaaaavababbbb
1jqk_A_3221jqk   A322334LPILTGALEAMVVHHHHTT---EEEEaaaaavababbxb
1o6z_A_311o6z   A3951NIALRDIADEVVFHHHHTT--SEEEEaaaaalababbbx
1oao_A_3371oao   A339351LAICTGAIDAMCVHHHTTS--SEEEEaaaaavaxabbbb
1oyw_A_2721oyw   A280292EKFQRDDLQIVVAHHHHTTS-SEEEEaaaaavababbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aa6_*_3861aa6   *     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE M - 401
1b93_A_701b93   A     FMTFORMIC ACID D - 71
1b93_A_701b93   A     FMTFORMIC ACID F - 88
1dhs_*_1121dhs   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 130
1gtk_A_631gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID S - 81
1ja1_A_5761ja1   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 594
1ja1_A_5761ja1   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 595
1jp4_A_2211jp4   A     MGMAGNESIUM ION A - 221
1jp4_A_2211jp4   A     AMPADENOSINE MONOPHOSPHATE A - 221
1jp4_A_2211jp4   A     AMPADENOSINE MONOPHOSPHATE K - 224
1jp4_A_2211jp4   A     AMPADENOSINE MONOPHOSPHATE Y - 236
1jp4_A_2211jp4   A     AMPADENOSINE MONOPHOSPHATE F - 238
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 31
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 32
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 33
1o6z_A_311o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 52
1oao_A_3371oao   A     GOLGLYCEROL E - 338

Clusters included in this Subclass
CLUSTER: HE.5.324
CLUSTER: HE.6.22