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Information on SUBCLASS 4.2.7
Subclass Accession number: 8423
Subclass: 4.2.7 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 13.3 +/- 14.5
Average RMSD (Å) : 0.680 +/- 0.130

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: ppGXhpXh
(φψ)-conformation: aalababb
Pattern: [AGLM][ACFM][AEKNR][NQRTY][GN]x[AFILT][DKR]x[ILP][AIMVY][gil]
Conservation:-0.486-0.045-0.069-0.4202.926-0.376-0.4590.553-0.276-0.118-0.108-1.122
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dfm_A_1451dfm   A155166LAEYNVFDVPIRHHHTT---S-EEaaaalabaxwbx
1ldn_A_301ldn   A3950LMNQGIADEIVLHHHHT--SEEEEaaaavababbbb
1li4_A_1581li4   A167178MMANGILKVPAIHHHTT---SEEEaaaavapabxbb
1n62_B_4561n62   B469480AFKRGETREIMGHHHTTS-SEEEEaaaavabaxbbb
1oyw_A_1101oyw   A110121GCRTGQIRLLYIHHHHT--SEEEEaaaavababbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dfm_A_1451dfm   A     MSESELENOMETHIONINE E - 146
1dfm_A_1451dfm   A     CACALCIUM ION E - 146
1dfm_A_1451dfm   A     MSESELENOMETHIONINE V - 163
1dfm_A_1451dfm   A     MSESELENOMETHIONINE P - 164
1dfm_A_1451dfm   A     MSESELENOMETHIONINE L - 170
1dfm_A_1451dfm   A     CACALCIUM ION L - 170
1ldn_A_301ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 30
1ldn_A_301ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 31
1ldn_A_301ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 32
1ldn_A_301ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 51
1li4_A_1581li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 158
1li4_A_1581li4   A     NOC3-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-CYCLOPENTANE-1, 2-DIOL T - 158
1li4_A_1581li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 159
1li4_A_1581li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 160
1li4_A_1581li4   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 162
1oyw_A_1101oyw   A     MSESELENOMETHIONINE G - 110
1oyw_A_1101oyw   A     MSESELENOMETHIONINE C - 111
1oyw_A_1101oyw   A     MSESELENOMETHIONINE R - 112
1oyw_A_1101oyw   A     MSESELENOMETHIONINE T - 113
1oyw_A_1101oyw   A     MSESELENOMETHIONINE G - 114
1oyw_A_1101oyw   A     MSESELENOMETHIONINE Q - 115
1oyw_A_1101oyw   A     MSESELENOMETHIONINE I - 116
1oyw_A_1101oyw   A     MSESELENOMETHIONINE Y - 120
1oyw_A_1101oyw   A     MSESELENOMETHIONINE I - 121

Clusters included in this Subclass
CLUSTER: HE.4.255
CLUSTER: HE.5.225
CLUSTER: HE.6.187