ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.10.1

Subclass Accession number: 843
Subclass: 9.10.1

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
SCOP : 48726 (>75 %) 48727 (>75 %) 50412 (>75 %) 63380 (>75 %)

Number of loops: 2

Average sequence ID (%) : 23.1 +/- 0.0
Average RMSD (Å) : 0.600 +/- 0.000

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	ppLXXPKXXXpTh
(φψ)-conformation:	bpappaapabpbb

Pattern:	x	[AT]	[A]	[RT]	[IL]	[LV]	[S]	x	[EQ]	[NS]	[L]	x	[GS]	[P]	[K]	[AS]	[PS]	[GR]	[ES]	[T]	[CI]	[FH]	[IV]	x	[IL]	[DH]
Conservation:	-1.029	-0.487	0.778	-0.667	0.056	-0.306	0.778	-1.571	0.417	0.056	0.778	-1.209	-0.306	2.947	1.501	-0.306	-0.487	-0.848	-0.487	1.501	-0.125	0.056	0.417	-1.571	0.056	0.056

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f20_A_993	1f20	A	993	1018	SAARLLSRQNLQSPKSSRSTIFVRLH	EEEEEEEEEE-S-TT-SS-EEEEEEE	bbbbxabbbxaxxaaxabbbbbbbbb
1jb9_A_34	1jb9	A	34	59	FTATIVSVESLVGPKAPGETCHIVID	EEEEEEEEEE-S-TTSSS-EEEEEEE	xxxbxabbbxabxaaxabxbbbbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f20_A_993	1f20	A	FMTFORMIC ACID	L - 1003
1f20_A_993	1f20	A	FMTFORMIC ACID	Q - 1004
1f20_A_993	1f20	A	FMTFORMIC ACID	S - 1005
1f20_A_993	1f20	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	R - 1010
1f20_A_993	1f20	A	GOLGLYCEROL	R - 1010
1f20_A_993	1f20	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	T - 1012

Clusters included in this Subclass