Information on SUBCLASS 4.3.5 |
Subclass Accession number: 8430
Subclass: 4.3.5 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 14.7 +/- 16.2 Average RMSD (Å) : 0.880 +/- 0.327 Consensus geometry
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Consensus Sequence: | XpcXPhhX |
(φψ)-conformation: | aalpapbb |
Pattern: | [DQRTW] | x | [anrs] | [AT] | [aeqt] | [drsy] | [EGKN] | x | [DP] | [GTV] | [ikv] | x | [vw] | [ail] | [FGLMT] |
Conservation: | -0.534 | -0.601 | -0.500 | 1.628 | -0.433 | -0.669 | 0.227 | -0.479 | 2.884 | 0.164 | -0.047 | -0.837 | -0.204 | 0.069 | -0.669 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bfd_*_438 | 1bfd | - | 439 | 453 | WTAAQYNIPTIFVIM | HHHHHHT---EEEEE | aaaaaalxaxbbbxx |
1ddg_A_465 | 1ddg | A | 472 | 486 | QQRAADEAPGKNWLF | HHHHHHT--S-EEEE | aaaaaalxapxbbbb |
1gpu_A_450 | 1gpu | A | 454 | 468 | RLSALSGHPVIWVAT | HHHHHHT---EEEEE | aaaaaavxaxbbxbx |
1lbv_A_87 | 1lbv | A | 87 | 101 | TFNATRGIPVYSVSL | HHHHHTT-S--EEEE | aaaaaavxabbbxbb |
1qmg_A_136 | 1qmg | A | 146 | 160 | DSLTEAKSDVVVKIG | HHHHHTT---EEEEE | aaaaaavxaxxbbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bfd_*_438 | 1bfd | * | CACALCIUM ION | M - 453 |
1bfd_*_438 | 1bfd | * | TPPTHIAMINE DIPHOSPHATE | M - 453 |
1bfd_*_438 | 1bfd | * | CACALCIUM ION | N - 454 |
1ddg_A_465 | 1ddg | A | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 465 |
1ddg_A_465 | 1ddg | A | FADFLAVIN-ADENINE DINUCLEOTIDE | P - 466 |
1qmg_A_136 | 1qmg | A | DMV2,3-DIHYDROXY-VALERIANIC ACID | Q - 136 |
1qmg_A_136 | 1qmg | A | APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE | Q - 136 |
1qmg_A_136 | 1qmg | A | APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE | A - 137 |
1qmg_A_136 | 1qmg | A | APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE | P - 138 |
1qmg_A_136 | 1qmg | A | APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE | Q - 140 |
1qmg_A_136 | 1qmg | A | APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE | L - 161 |
Clusters included in this Subclass |
CLUSTER: HE.4.195 |
CLUSTER: HE.5.166 |