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Information on SUBCLASS 4.5.6
Subclass Accession number: 8441
Subclass: 4.5.6 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003676 (>50 %)  GO:0003677 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 7.8 +/- 8.8
Average RMSD (Å) : 1.100 +/- 0.400

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXXhXh
(φψ)-conformation: aapaapbb
Pattern: xxx[EHP][AFV]x[AKR][AK]x[KPR]x[FV]x[ACI]xx[CFY]
Conservation:-1.347-0.6780.5050.679-0.334-1.0090.6791.153-1.0090.848-0.3341.331-0.1650.511-1.009-1.5161.693
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dnp_A_1071dnp   A112128RDVEVERALRNVVCEGFHHHHHHHH-TTSEEEEEaaaaaaaaxaabxbbxb
1mu2_A_1561mu2   A167183VLEPFRKANKDVIIIQYHHHHHHHH-TTSEEEEEaaaaaaaabaaxxbbbb
1vgv_A_181vgv   A1834PLVHALAKDPFFEAKVCHHHHHHHHSTT--EEEEaaaaaaaaxaaxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dnp_A_1071dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID V - 107
1dnp_A_1071dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID N - 108
1dnp_A_1071dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID E - 109
1mu2_A_1561mu2   A     GOLGLYCEROL I - 179
1mu2_A_1561mu2   A     GOLGLYCEROL I - 181
1vgv_A_181vgv   A     MSESELENOMETHIONINE P - 18
1vgv_A_181vgv   A     MSESELENOMETHIONINE L - 19
1vgv_A_181vgv   A     MSESELENOMETHIONINE V - 20
1vgv_A_181vgv   A     MSESELENOMETHIONINE H - 21
1vgv_A_181vgv   A     MSESELENOMETHIONINE F - 28
1vgv_A_181vgv   A     MSESELENOMETHIONINE F - 29
1vgv_A_181vgv   A     MSESELENOMETHIONINE E - 30
1vgv_A_181vgv   A     MSESELENOMETHIONINE A - 31

Clusters included in this Subclass
CLUSTER: HE.5.286