Information on SUBCLASS 4.21.1 |
Subclass Accession number: 8481
Subclass: 4.21.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 13 Average sequence ID (%) : 12.9 +/- 16.8 Average RMSD (Å) : 0.854 +/- 0.263 Consensus geometry
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Consensus Sequence: | XXXXcXph |
(φψ)-conformation: | aappgpbb |
Pattern: | x | x | x | x | [aegkq] | x | x | [dekprs] | [dgn] | x | [aeknrst] | [afilptv] | x |
Conservation: | -0.611 | -0.216 | -0.538 | -0.903 | -0.330 | -0.424 | -0.575 | 0.390 | 3.074 | -0.057 | 0.126 | 0.373 | -0.309 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8q_*_232 | 1a8q | - | 233 | 245 | RKSAQIIPNAELK | HHHHHHSTT-EEE | aaaaaaxpvxbbb |
1a8s_*_233 | 1a8s | - | 234 | 246 | IASAALVKGSTLK | HHHHHHSTT-EEE | aaaaaaxxvxbbb |
1aj6_*_184 | 1aj6 | - | 192 | 204 | RELSFLNSGVSIR | HHHHHHTTT-EEE | aaaaaabpgxxbb |
1bag_*_283 | 1bag | - | 290 | 302 | WAVIASRSGSTPL | HHHHTTSSS-EEE | aaaaaaxbgxxxb |
1euv_A_451 | 1euv | A | 459 | 470 | KYIEKSTPNTVA. | HHHHHHSTTEEE. | aaaaaabxlbbb. |
1j5s_A_159 | 1j5s | A | 162 | 174 | RKAKEAVEGVTIL | HHHHHH--S-EEE | aaaaaaxbgbbbb |
1l8a_A_366 | 1l8a | A | 373 | 385 | FKKAQETKGKATV | HHHHHH--SS-EE | aaaaaaxbvbxbb |
1mtz_A_248 | 1mtz | A | 252 | 264 | RVIHEKIAGSELH | HHHHHHSTT-EEE | aaaaaaxpvxbbb |
1ols_B_151 | 1ols | B | 151 | 163 | EAFFAHCPGIKVV | HHHHHT-TT-EEE | aaaaaabpgbbbb |
1p9l_A_81 | 1p9l | A | 88 | 100 | ESWLVAKPNTSVL | HHHHHTSTT-EEE | aaaaaabxvbbbb |
1pvg_A_221 | 1pvg | A | 224 | 236 | YDINGSVRDINVY | HHHHHHSTT-EEE | aaaaaaxxvbbbb |
3csu_A_167 | 3csu | A | 173 | 185 | TQALAKFDGNRFY | HHHHHTSSS-EEE | aaaaaabxvxbbb |
3csu_C_167 | 3csu | C | 173 | 185 | TQALAKFDGNRFY | HHHHTTSSS-EEE | aaaaaabxlxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | R - 221 |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | R - 222 |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | V - 223 |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | Y - 224 |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | D - 225 |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | R - 231 |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | D - 232 |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | I - 233 |
1pvg_A_221 | 1pvg | A | MSESELENOMETHIONINE | L - 237 |
Clusters included in this Subclass |
CLUSTER: HE.3.187 |
CLUSTER: HE.3.225 |
CLUSTER: HE.4.252 |
CLUSTER: HE.4.99 |
CLUSTER: HE.5.130 |
CLUSTER: HE.6.123 |