Information on SUBCLASS 4.25.3 |
Subclass Accession number: 8488
Subclass: 4.25.3 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0016835 (>75 %) GO:0016836 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 14.8 +/- 13.3 Average RMSD (Å) : 0.900 +/- 0.183 Consensus geometry
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Consensus Sequence: | XXhpGpXh |
(φψ)-conformation: | aappepbb |
Pattern: | x | [DP] | x | [FL] | x | x | x | [AL] | x | x | x | [HPQR] | [G] | [ESY] | x | x | [AGLV] | x |
Conservation: | -0.719 | 1.457 | -0.641 | 0.970 | -0.680 | -0.367 | -0.484 | 0.298 | -0.445 | -0.719 | -0.797 | 0.025 | 3.115 | 0.071 | -0.680 | -0.367 | -0.484 | 0.444 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1af7_*_102 | 1af7 | - | 103 | 120 | FPILAEHARRRHGEYRVW | HHHHHHHHHHS-S-EEEE | aaaaaaaaaapxexxbbb |
1kkc_A_122 | 1kkc | A | 126 | 143 | KDAFNTTLLGIQGSGWGW | HHHHHHHHHH--SSEEEE | aaaaaaaaaaxxexbbbb |
1qop_A_160 | 1qop | A | 160 | 177 | DDLLRQVASYGRGYTYLL | HHHHHHHHHH--S-EEEE | aaaaaaaaaaxbGbbxbx |
1r6w_A_114 | 1r6w | A | 114 | 131 | PDDLILKLADMPGEKVAK | HHHHHHHHHT--SSEEEE | aaaaaaaaaaxxexxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1af7_*_102 | 1af7 | * | SAHS-ADENOSYL-L-HOMOCYSTEINE | S - 121 |
1kkc_A_122 | 1kkc | A | MNMANGANESE (II) ION | W - 141 |
1qop_A_160 | 1qop | A | IPLINDOLE-3-PROPANOL PHOSPHATE | Y - 175 |
1qop_A_160 | 1qop | A | IPLINDOLE-3-PROPANOL PHOSPHATE | L - 177 |
1r6w_A_114 | 1r6w | A | MGMAGNESIUM ION | K - 131 |
1r6w_A_114 | 1r6w | A | 1642-(3-CARBOXYPROPIONYL)-6-HYDROXY-CYCLOHEXA-2,4-DIENE CARBOXYLIC ACID | K - 131 |
1r6w_A_114 | 1r6w | A | 1642-(3-CARBOXYPROPIONYL)-6-HYDROXY-CYCLOHEXA-2,4-DIENE CARBOXYLIC ACID | R - 133 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1qop_A_160 | 1qop | A | IPLSUBSTRATE ANALOG BOUND TO THE ALPHA ACTIVE SITE. | Y - 175 |
Clusters included in this Subclass |
CLUSTER: HE.4.206 |