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Information on SUBCLASS 4.28.1
Subclass Accession number: 8494
Subclass: 4.28.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 14.9 +/- 15.8
Average RMSD (Å) : 0.900 +/- 0.362

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXGhXXhX
(φψ)-conformation: aagpapbb
Pattern: xxxx[afkl][aegkrs][aegknqs]x[GQR][afilmtv][degknrt]x[itvy]x
Conservation:-0.590-0.305-0.591-0.7180.237-0.210-0.099-0.2333.074-0.012-0.593-0.4221.081-0.618
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa6_*_1141aa6   -121134QKFARAVIGTNNVDHHHHHHTT----EEaaaaaaaagbaxbb
1ed8_A_1911ed8   A191204ITEQLLNARADVTLHHHHHHHH--SEEEaaaaaaaalxabbb
1g71_A_1151g71   A129142LIILREELGFENIHHHHHHHTT---SEEaaaaaaaavxaxbb
1g8k_A_1731g8k   A180193GKLMFSAIQTPMVRHHHHHTTT----EEaaaaaaaavxaxbb
1h0h_A_1331h0h   A139152YQAWLRSLGLFYIEHHHHHHHTTB--EEaaaaaaaavxaxbb
1ihu_A_2091ihu   A218231THLELAAIGLKNQYHHHHHHHHT---EEaaaaaaaagxabbb
1jqb_A_11771jqb   A11821195GIAGAKLRGAGRIIHHHHHHTTT-S-EEaaaaaaaavpaxbx
1kqf_A_1711kqf   A177190TQKFARSLGMLAVDHHHHHHHTTB--EEaaaaaaaavxaxbb
1nwc_A_761nwc   A8295VYPKLKATGWDGYWHHHHHHHTT--SEEaaaaaaaavpaxbb
1o98_A_1261o98   A132145LLRLAAKEGVKRVYHHHHHHHTT---EEaaaaaaaavxabbb
1psd_A_211psd   A2336ALESLRAAGYTNIEHHHHHHHTT---EEaaaaaaaavxaxbb
1qo2_A_321qo2   A3548LVEKLIEEGFTLIHHHHHHHHTT---EEaaaaaaaavxabbx
2nap_A_1142nap   A121134NKIFKGGFGTNNVDHHHHHHTS----EEaaaaaaaavbaxbb
4tmk_A_164tmk   A2336VVETLEQLGIRDMVHHHHHHHTT---EEaaaaaaaavbaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g71_A_1151g71   A     ZNZINC ION P - 115
1g71_A_1151g71   A     ZNZINC ION I - 116
1g71_A_1151g71   A     ZNZINC ION C - 117
1g71_A_1151g71   A     ZNZINC ION L - 118
1g8k_A_1731g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE N - 175
1h0h_A_1331h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER E - 135
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE K - 209
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE S - 210
1ihu_A_2091ihu   A     AF3ALUMINUM FLUORIDE S - 210
1ihu_A_2091ihu   A     AF3ALUMINUM FLUORIDE E - 214
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE N - 235
1ihu_A_2091ihu   A     TASTRIHYDROXYARSENITE(III) N - 235
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE G - 236
1ihu_A_2091ihu   A     TASTRIHYDROXYARSENITE(III) G - 236
1ihu_A_2091ihu   A     ADPADENOSINE-5'-DIPHOSPHATE V - 237
1qo2_A_321qo2   A     MSESELENOMETHIONINE F - 44
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE K - 16
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 17
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 18
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 19
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE R - 39
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0h_A_1331h0h   A 2APUTATIVE PROTON CHANNELE - 134
1o98_A_1261o98   A AC8SO4 BINDING SITE FOR CHAIN AR - 134

Clusters included in this Subclass
CLUSTER: HE.4.197
CLUSTER: HE.5.53
CLUSTER: HE.6.87
CLUSTER: HE.7.41