Information on SUBCLASS 4.28.1 |
Subclass Accession number: 8494
Subclass: 4.28.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 14.9 +/- 15.8 Average RMSD (Å) : 0.900 +/- 0.362 Consensus geometry
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Consensus Sequence: | XXGhXXhX |
(φψ)-conformation: | aagpapbb |
Pattern: | x | x | x | x | [afkl] | [aegkrs] | [aegknqs] | x | [GQR] | [afilmtv] | [degknrt] | x | [itvy] | x |
Conservation: | -0.590 | -0.305 | -0.591 | -0.718 | 0.237 | -0.210 | -0.099 | -0.233 | 3.074 | -0.012 | -0.593 | -0.422 | 1.081 | -0.618 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aa6_*_114 | 1aa6 | - | 121 | 134 | QKFARAVIGTNNVD | HHHHHHTT----EE | aaaaaaaagbaxbb |
1ed8_A_191 | 1ed8 | A | 191 | 204 | ITEQLLNARADVTL | HHHHHHHH--SEEE | aaaaaaaalxabbb |
1g71_A_115 | 1g71 | A | 129 | 142 | LIILREELGFENIH | HHHHHHTT---SEE | aaaaaaaavxaxbb |
1g8k_A_173 | 1g8k | A | 180 | 193 | GKLMFSAIQTPMVR | HHHHHTTT----EE | aaaaaaaavxaxbb |
1h0h_A_133 | 1h0h | A | 139 | 152 | YQAWLRSLGLFYIE | HHHHHHHTTB--EE | aaaaaaaavxaxbb |
1ihu_A_209 | 1ihu | A | 218 | 231 | THLELAAIGLKNQY | HHHHHHHHT---EE | aaaaaaaagxabbb |
1jqb_A_1177 | 1jqb | A | 1182 | 1195 | GIAGAKLRGAGRII | HHHHHHTTT-S-EE | aaaaaaaavpaxbx |
1kqf_A_171 | 1kqf | A | 177 | 190 | TQKFARSLGMLAVD | HHHHHHHTTB--EE | aaaaaaaavxaxbb |
1nwc_A_76 | 1nwc | A | 82 | 95 | VYPKLKATGWDGYW | HHHHHHHTT--SEE | aaaaaaaavpaxbb |
1o98_A_126 | 1o98 | A | 132 | 145 | LLRLAAKEGVKRVY | HHHHHHHTT---EE | aaaaaaaavxabbb |
1psd_A_21 | 1psd | A | 23 | 36 | ALESLRAAGYTNIE | HHHHHHHTT---EE | aaaaaaaavxaxbb |
1qo2_A_32 | 1qo2 | A | 35 | 48 | LVEKLIEEGFTLIH | HHHHHHHTT---EE | aaaaaaaavxabbx |
2nap_A_114 | 2nap | A | 121 | 134 | NKIFKGGFGTNNVD | HHHHHHTS----EE | aaaaaaaavbaxbb |
4tmk_A_16 | 4tmk | A | 23 | 36 | VVETLEQLGIRDMV | HHHHHHHTT---EE | aaaaaaaavbaxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h0h_A_133 | 1h0h | A | 2APUTATIVE PROTON CHANNEL | E - 134 |
1o98_A_126 | 1o98 | A | AC8SO4 BINDING SITE FOR CHAIN A | R - 134 |
Clusters included in this Subclass |
CLUSTER: HE.4.197 |
CLUSTER: HE.5.53 |
CLUSTER: HE.6.87 |
CLUSTER: HE.7.41 |