ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 7.1.1

Subclass Accession number: 85
Subclass: 7.1.1
Type: HA beta-beta hairpin
DB: ArchDB-KI

Number of loops: 3

Average sequence ID (%) : 77.8 +/- 2.5
Average RMSD (Å) : 0.46 +/- 0.01

Consensus geometry

d (Å): 5

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	RpSETTKGXYX
(φψ)-conformation:	bppaappgpbb

Pattern:	[F]	[LM]	[IV]	[R]	[DE]	[S]	[E]	[T]	[T]	[K]	[G]	x	[Y]	[CS]	[L]	[S]	[V]	[RS]
Conservation:	1.274	-0.794	-0.606	0.522	-0.418	-0.230	0.522	0.522	0.522	0.522	1.274	-1.358	2.026	-1.170	-0.230	-0.230	-0.230	-1.922

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ad5_A_172	1ad5	A	172	189	FMIRDSETTKGSYSLSVR	EEEEE-SSSTTSEEEEEE	bbbbxxaaxpvbbbbbbx
2ptk_*_172	2ptk	-	172	189	FLVRESETTKGAYCLSVS	EEEEE-SSSTT-EEEEEE	bbbbxxaaxpgxbbbbbx
2src_*_171	2src	-	172	189	FLVRESETTKGAYCLSVS	EEEEE-SSSTT-EEEEEE	bbbbxxaabpvxbbbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	R - 175
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	D - 176
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	S - 177
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	E - 178
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	T - 179
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	T - 180
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	Y - 184
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	S - 185
1ad5_A_172	1ad5	A	PTRO-PHOSPHOTYROSINE	L - 186
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	R - 175
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	E - 176
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	S - 177
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	E - 178
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	T - 179
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	T - 180
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	Y - 184
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	C - 185
2ptk_*_172	2ptk	*	PTRO-PHOSPHOTYROSINE	L - 186

Clusters included in this Subclass

CLUSTER: HA.6.7