Information on SUBCLASS 10.8.1 |
Subclass Accession number: 851
Subclass: 10.8.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003677 (>75 %) GO:0003700 (>75 %) GO:0005515 (>75 %) GO:0005529 (>75 %) GO:0030246 (>75 %) SCOP : 50352 (>75 %) 50370 (>75 %) 50371 (>75 %) 81279 (>75 %) 81296 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 25.9 +/- 17.7 Average RMSD (Å) : 0.333 +/- 0.058 Consensus geometry
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Consensus Sequence: | DhXcpXXXcGpXhX |
(φψ)-conformation: | bppllpappgppbb |
Pattern: | [CTV] | [LV] | [D] | [AV] | x | [DGN] | [DNS] | [DGQ] | [FIT] | x | [DN] | [G] | [NT] | x | [IV] | x | [LV] | [DWY] |
Conservation: | -0.531 | 0.130 | 2.281 | -0.133 | -1.234 | -0.250 | -0.109 | -0.742 | -0.882 | -0.408 | 0.805 | 2.281 | 0.259 | -1.023 | 0.723 | -0.775 | 0.138 | -0.531 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1knm_A_100 | 1knm | A | 100 | 117 | CLDAVGNGTANGTLIQLY | EEEEGGG--STT-BEEEE | xpbxpvlxaxpvpxbbxb |
1m2t_B_268 | 1m2t | B | 268 | 285 | TVDVRDDDFHDGNQIQLW | EEEEGGG--STT-BEEEE | bxbxpllbappgxxxbxb |
1qxm_A_253 | 1qxm | A | 254 | 271 | VLDVYNSQIANGTHVIVD | EEEEGGG--STT-BEEEE | bxbxpllxappgpxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1knm_A_100 | 1knm | A | LATLACTOSE | D - 102 |
1knm_A_100 | 1knm | A | LATLACTOSE | A - 103 |
1knm_A_100 | 1knm | A | LATLACTOSE | V - 104 |
1knm_A_100 | 1knm | A | LATLACTOSE | G - 105 |
1knm_A_100 | 1knm | A | LATLACTOSE | N - 106 |
1knm_A_100 | 1knm | A | LATLACTOSE | Q - 115 |
1knm_A_100 | 1knm | A | LATLACTOSE | Y - 117 |
1m2t_B_268 | 1m2t | B | GOLGLYCEROL | D - 270 |
1m2t_B_268 | 1m2t | B | GOLGLYCEROL | V - 271 |
1m2t_B_268 | 1m2t | B | GOLGLYCEROL | R - 272 |
1m2t_B_268 | 1m2t | B | GOLGLYCEROL | D - 273 |
1m2t_B_268 | 1m2t | B | NAGN-ACETYL-D-GLUCOSAMINE | D - 274 |
1m2t_B_268 | 1m2t | B | GOLGLYCEROL | D - 274 |
1m2t_B_268 | 1m2t | B | NAGN-ACETYL-D-GLUCOSAMINE | D - 275 |
1m2t_B_268 | 1m2t | B | NAGN-ACETYL-D-GLUCOSAMINE | F - 276 |
1m2t_B_268 | 1m2t | B | GOLGLYCEROL | Q - 283 |
1m2t_B_268 | 1m2t | B | GOLGLYCEROL | W - 285 |
Clusters included in this Subclass |
CLUSTER: HA.9.18 |