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Information on SUBCLASS 5.2.3
Subclass Accession number: 8556
Subclass: 5.2.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 12.1 +/- 13.1
Average RMSD (Å) : 0.500 +/- 0.100

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XhXXXpTph
(φψ)-conformation: aappaapbb
Pattern: x[CI][ERY][DR]x[MTV][DER]x[FLV][DKR][AKR][LV][KL][KP][DKP][DEN][T][HQR][FIV][CGM][ALM]x
Conservation:-1.4660.568-0.7180.472-0.611-0.1840.030-1.145-0.184-0.184-0.1840.864-0.3401.351-0.3980.7773.1270.4570.243-1.038-0.291-1.145
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bdg_*_4231bdg   -423444FCERMTDMVDKLKPKNTRFCLRHHHHHHHHHHHHS-TT-EEEEEaaaaaaaaaaaaxpaaxbbbxb
1nvm_A_1771nvm   A179200DIRDRMRAFKAVLKPETQVGMHHHHHHHHHHHHHS-TTSEEEEEaaaaaaaaaaaaxxaaxxbbbb
1sft_A_141sft   A1637AIYDNVENLRRLLPDDTHIMAVHHHHHHHHHHHHS-TTSEEEEEaaaaaaaaaaaaxpaaxxbxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nvm_A_1771nvm   A     MPD2-METHYL-2,4-PENTANEDIOL M - 177
1nvm_A_1771nvm   A     MPD2-METHYL-2,4-PENTANEDIOL D - 179
1nvm_A_1771nvm   A     MNMANGANESE (II) ION H - 200
1nvm_A_1771nvm   A     OXLOXALATE ION H - 200
1sft_A_141sft   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 37

Clusters included in this Subclass
CLUSTER: HE.6.90