Logo
Information on SUBCLASS 5.2.4
Subclass Accession number: 8557
Subclass: 5.2.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.9 +/- 20.0
Average RMSD (Å) : 0.667 +/- 0.208

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXXXXpXpX
(φψ)-conformation: aappaapbb
Pattern: x[LY]x[EY][AEF]x[PR][PR][DEK][SV][KNR]x
Conservation:-1.1500.672-1.1500.598-1.150-0.5701.1371.3700.821-0.2460.821-1.150
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ao0_A_2371ao0   A239250EYIYFSRPDSNIHHHTTS-TT-EEaaaNaxxaaxbx
1i7q_A_801i7q   A8394LLDEALPPEVRNHHHHHS-TTSEEaaaaaxxaaxxb
1q1a_A_2331q1a   A233244SLPEEIPRKVKRHHHHHS-TTSEEaaaaaxwaabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ao0_A_2371ao0   A     FS4IRON/SULFUR CLUSTER S - 237
1ao0_A_2371ao0   A     FS4IRON/SULFUR CLUSTER M - 238
1ao0_A_2371ao0   A     5GPGUANOSINE-5'-MONOPHOSPHATE M - 238
1ao0_A_2371ao0   A     FS4IRON/SULFUR CLUSTER E - 239
1ao0_A_2371ao0   A     ADPADENOSINE-5'-DIPHOSPHATE I - 241
1ao0_A_2371ao0   A     5GPGUANOSINE-5'-MONOPHOSPHATE Y - 242
1ao0_A_2371ao0   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 242
1ao0_A_2371ao0   A     MGMAGNESIUM ION Y - 242
1ao0_A_2371ao0   A     5GPGUANOSINE-5'-MONOPHOSPHATE F - 243
1ao0_A_2371ao0   A     ADPADENOSINE-5'-DIPHOSPHATE F - 243
1ao0_A_2371ao0   A     ADPADENOSINE-5'-DIPHOSPHATE S - 244
1ao0_A_2371ao0   A     ADPADENOSINE-5'-DIPHOSPHATE R - 245
1ao0_A_2371ao0   A     ADPADENOSINE-5'-DIPHOSPHATE P - 246
1q1a_A_2331q1a   A     OAD2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE C - 247

Clusters included in this Subclass
CLUSTER: HE.6.257