Information on SUBCLASS 5.2.4 |
Subclass Accession number: 8557
Subclass: 5.2.4 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 13.9 +/- 20.0 Average RMSD (Å) : 0.667 +/- 0.208 Consensus geometry
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Consensus Sequence: | pXXXXpXpX |
(φψ)-conformation: | aappaapbb |
Pattern: | x | [LY] | x | [EY] | [AEF] | x | [PR] | [PR] | [DEK] | [SV] | [KNR] | x |
Conservation: | -1.150 | 0.672 | -1.150 | 0.598 | -1.150 | -0.570 | 1.137 | 1.370 | 0.821 | -0.246 | 0.821 | -1.150 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ao0_A_237 | 1ao0 | A | 239 | 250 | EYIYFSRPDSNI | HHHTTS-TT-EE | aaaNaxxaaxbx |
1i7q_A_80 | 1i7q | A | 83 | 94 | LLDEALPPEVRN | HHHHHS-TTSEE | aaaaaxxaaxxb |
1q1a_A_233 | 1q1a | A | 233 | 244 | SLPEEIPRKVKR | HHHHHS-TTSEE | aaaaaxwaabxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ao0_A_237 | 1ao0 | A | FS4IRON/SULFUR CLUSTER | S - 237 |
1ao0_A_237 | 1ao0 | A | FS4IRON/SULFUR CLUSTER | M - 238 |
1ao0_A_237 | 1ao0 | A | 5GPGUANOSINE-5'-MONOPHOSPHATE | M - 238 |
1ao0_A_237 | 1ao0 | A | FS4IRON/SULFUR CLUSTER | E - 239 |
1ao0_A_237 | 1ao0 | A | ADPADENOSINE-5'-DIPHOSPHATE | I - 241 |
1ao0_A_237 | 1ao0 | A | 5GPGUANOSINE-5'-MONOPHOSPHATE | Y - 242 |
1ao0_A_237 | 1ao0 | A | ADPADENOSINE-5'-DIPHOSPHATE | Y - 242 |
1ao0_A_237 | 1ao0 | A | MGMAGNESIUM ION | Y - 242 |
1ao0_A_237 | 1ao0 | A | 5GPGUANOSINE-5'-MONOPHOSPHATE | F - 243 |
1ao0_A_237 | 1ao0 | A | ADPADENOSINE-5'-DIPHOSPHATE | F - 243 |
1ao0_A_237 | 1ao0 | A | ADPADENOSINE-5'-DIPHOSPHATE | S - 244 |
1ao0_A_237 | 1ao0 | A | ADPADENOSINE-5'-DIPHOSPHATE | R - 245 |
1ao0_A_237 | 1ao0 | A | ADPADENOSINE-5'-DIPHOSPHATE | P - 246 |
1q1a_A_233 | 1q1a | A | OAD2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE | C - 247 |
Clusters included in this Subclass |
CLUSTER: HE.6.257 |