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Information on SUBCLASS 5.3.1
Subclass Accession number: 8560
Subclass: 5.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 17.8 +/- 18.3
Average RMSD (Å) : 0.817 +/- 0.248

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: pXhXXhpXh
(φψ)-conformation: aapppgpbb
Pattern: x[adeknqrst][afilvy][afilmtv][adekqrst][aegknrst][ailmv][knprst]x[fg][degkst]x[filmv][fikltv]
Conservation:-1.457-0.580-0.649-0.029-0.032-0.9660.6670.360-0.6112.0840.499-0.7671.731-0.250
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
13pk_A_11713pk   A117130ADVVSKMSPGDVVLHHHHHT--TT-EEEaaaaaaxbpvxbbb
1ajs_A_1701ajs   A174187LSDLENAPEFSIFVHHHHHHS-TT-EEEaaaaaaxppvpxbx
1cqx_A_2351cqx   A238251NLLHDHVNVGDQVKHHHHHH--TT-EEEaaaaaabbpgxbbb
1dbg_A_311dbg   A3548YQVVKEVKPGGLVQHHHHHH--TT-EEEaaaaaapbpvxbbb
1e89_A_591e89   A6275LTFLEKLPQGEKVIHHHHHHS-TT--EEaaaaaapppvxbbb
1fsu_*_2111fsu   -220233IALITNHPPEKPLFHHHHHT--TTS-EEaaaaaaxxpvbwbb
1k7c_A_531k7c   A5568ENIADVVTAGDYVIHHHHHH--TT-EEEaaaaaaxbpvxbbb
1mgt_A_911mgt   A98111EWLTKNVKRGSVITHHHHHHS-TT--EEaaaaaaxxpvbbbx
1nsj_*_401nsj   -4457RRISVELPPFVFRVHHHHHHS-SSSEEEaaaaaaxwxvbxbb
1nw3_A_2471nw3   A254267KERFANMKEGGRIVHHHHTT--TT-EEEaaaaaaxxpvxbbb
1oaa_*_191oaa   -2639PQLARLLSPGSVMLHHHHTTB-TT-EEEaaaaaaxxpvxbbb
1ovm_A_3621ovm   A367380RTLQTFIRPGDIILHHHHHH--TT-EEEaaaaaaxbpvxbbb
1php_*_971php   -100113KAAVDRLNEGDVLLHHHHHT--TT-EEEaaaaaaxbpvxbbb
1qau_A_771qau   A8194LEVLRGIASETHVVHHHHHHS-SSSEEEaaaaaappxvbxbb
1qj4_A_591qj4   A6275LTFLEALPPGEKVIHHHHHTS-TT--EEaaaaaaxxpvxbbb
1qnt_A_941qnt   A100113WKLLKVVKFGEVISHHHHHH--TT--EEaaaaaaxxxvbbbx
1qpg_*_1001qpg   -103116EAAVKASAPGSVILHHHHHT--TTEEEEaaaaaaxxpvxbbb
1sfe_*_951sfe   -101114WQALRTIPCGETVSHHHHTTS-TT--EEaaaaaaxxxgbbbx
1vpe_*_971vpe   -100113KKAVEELKEGEVLLHHHHHT--TTEEEEaaaaaaxxxvbbbb
1yaa_A_1701yaa   A174187LNAIQKAPEGSIFVHHHHHHS-TT-EEEaaaaaaxxpvxxbx
2ay1_A_1702ay1   A174187KADLAAAKKGDMVLHHHHHT--TT-EEEaaaaaaxxxgxbbx
2cnd_*_962cnd   -98111TQYLDSLPVGSYIDHHHHHH--TT-EEEaaaaaaxxxgxbbb
2cst_A_1702cst   A174187LDDMEKAPEFSIFIHHHHHTS-TT-EEEaaaaaaxxpvpxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ajs_A_1701ajs   A     PLA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID H - 189
1cqx_A_2351cqx   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 235
1cqx_A_2351cqx   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 236
1cqx_A_2351cqx   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 237
1cqx_A_2351cqx   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 238
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE T - 212
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE N - 213
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE I - 214
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE T - 216
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE K - 217
1fsu_*_2111fsu   *     NAGN-ACETYL-D-GLUCOSAMINE I - 220
1nw3_A_2471nw3   A     SAMS-ADENOSYLMETHIONINE V - 249
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 19
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 20
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 21
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 41
1oaa_*_191oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 42
1ovm_A_3621ovm   A     TPPTHIAMINE DIPHOSPHATE Q - 362
1qj4_A_591qj4   A     GOLGLYCEROL E - 79
1yaa_A_1701yaa   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 189
2cnd_*_962cnd   *     FADFLAVIN-ADENINE DINUCLEOTIDE L - 96
2cnd_*_962cnd   *     FADFLAVIN-ADENINE DINUCLEOTIDE M - 97
2cnd_*_962cnd   *     FADFLAVIN-ADENINE DINUCLEOTIDE T - 98
2cnd_*_962cnd   *     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 99
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e89_A_591e89   A ASAACTIVE SITE A. CATALYTIC RESIDUE SER 80 IS MUTATED TO ALAA - 80

Clusters included in this Subclass
CLUSTER: HE.4.118
CLUSTER: HE.5.142
CLUSTER: HE.5.56
CLUSTER: HE.6.12
CLUSTER: HE.7.45
CLUSTER: HE.7.74