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Information on SUBCLASS 5.4.2
Subclass Accession number: 8563
Subclass: 5.4.2 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 7.9 +/- 9.5
Average RMSD (Å) : 1.214 +/- 0.313

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXXXXXpXh
(φψ)-conformation: aalbppabb
Pattern: [acpst]x[DEKNQ][AKMTV][ALMVY]xxxx[aenqr][adegkr]x[EGNR]x[cdkqr]x[DHKNQ]x[filvy]x
Conservation:0.126-0.1242.2040.5081.137-0.360-1.073-0.499-1.163-0.588-0.7970.1411.818-0.740-0.155-0.5481.700-0.8740.186-0.901
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bu6_O_3731bu6   O388407TRDVLEAMQADSGIRLHALRHHHHHHHHHHHH----SEEEaaaaaaaaaaaavbbxabbx
1f7u_A_2601f7u   A273292SIEKYIDTYARLNIKYDVYSHHHHHHHHHHHTT---SEEEaaaaaaaaaaaalbbxabbx
1gqv_A_231gqv   A2342CTNAMQVINNYQRRCKNQNTHHHHHHHHHHHHTS--SEEEaaaaaaaaaaaavbxxabbb
1ig3_A_1201ig3   A124143CLQVLQRKIEEKELQVDVIVHHHHHHHHHHHTT---SEEEaaaaaaaaaaaalxbbabbx
1k1x_A_951k1x   A101120QIEMLKDYARKLGYDAKGVWHHHHHHHHHHHTT----EEEaaaaaaaaaaaavbxpabbx
1l5x_A_701l5x   A7089PSDTVYLATFGLGRKYDIVLHHHHHHHHHHHHTS--SEEEaaaaaaaaaaaavbxxabbb
1qj5_A_1121qj5   A119138AMKMALQYWQAKGEARQRFLHHHHHHHHHHHTT----EEEaaaaaaaaaaaavbxbaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gqv_A_231gqv   A     ACTACETATE ION L - 44
1ig3_A_1201ig3   A     VIB3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY -ETHYL)-4-METHYL-THIAZOL-3-IUM D - 120
1ig3_A_1201ig3   A     VIB3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY -ETHYL)-4-METHYL-THIAZOL-3-IUM K - 123
1l5x_A_701l5x   A     MSESELENOMETHIONINE L - 76
1l5x_A_701l5x   A     GOLGLYCEROL L - 76
1l5x_A_701l5x   A     MSESELENOMETHIONINE A - 77
1l5x_A_701l5x   A     GOLGLYCEROL A - 77
1l5x_A_701l5x   A     GOLGLYCEROL T - 78
1l5x_A_701l5x   A     MSESELENOMETHIONINE F - 79
1l5x_A_701l5x   A     MSESELENOMETHIONINE G - 80
1l5x_A_701l5x   A     GOLGLYCEROL G - 80
1l5x_A_701l5x   A     GOLGLYCEROL L - 81
1l5x_A_701l5x   A     GOLGLYCEROL Y - 85
1l5x_A_701l5x   A     MSESELENOMETHIONINE D - 86
1l5x_A_701l5x   A     MSESELENOMETHIONINE I - 92
1qj5_A_1121qj5   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 112
1qj5_A_1121qj5   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 113
1qj5_A_1121qj5   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 114
1qj5_A_1121qj5   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 116
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AR - 36
1gqv_A_231gqv   A P1P1 CAYALYTIC SUBSITE FOR CHAIN AK - 38
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AN - 39
1gqv_A_231gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AQ - 40

Clusters included in this Subclass
CLUSTER: HE.5.75