Information on SUBCLASS 5.6.2 |
Subclass Accession number: 8570
Subclass: 5.6.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 19.5 +/- 20.7 Average RMSD (Å) : 0.520 +/- 0.217 Consensus geometry
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Consensus Sequence: | phcLXcphX |
(φψ)-conformation: | aalaaaabb |
Pattern: | [AIV] | [AER] | [adnt] | [AIMV] | [KLM] | [AER] | [AFGV] | [IL] | [mqr] | [ADKNT] | [hmy] | [DGN] | [LV] | [ADEGK] | [DHKN] | [KRTY] | [FTV] | [gks] | [FV] |
Conservation: | 1.016 | -0.004 | -1.314 | 0.362 | -0.076 | -0.041 | -1.184 | 2.165 | -0.595 | -0.838 | -0.336 | 1.203 | 1.763 | -0.838 | 0.108 | -0.686 | -0.174 | -1.250 | 0.717 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a0c_A_246 | 1a0c | A | 246 | 264 | VANVLAFLRKYDLDKYFKV | HHHHHHHHHHTT-TTTEEE | aaaaaaaaaaalaaaabbb |
1a0d_A_244 | 1a0d | A | 244 | 262 | VATALAFLQTYGLKDYFKF | HHHHHHHHHHTT-GGGEEE | aaaaaaaaaaavaaaabbb |
1h7n_A_185 | 1h7n | A | 186 | 204 | IRDIKRGLINANLAHKTFV | HHHHHHHHHHTT-TTT-EE | aaaaaaaaaaalaaaabxb |
1jcl_A_179 | 1jcl | A | 182 | 200 | ARIMMEVIRDMGVEKTVGF | HHHHHHHHHHHT-TTT-EE | aaaaaaaaaaavaaaabxb |
1pv8_A_174 | 1pv8 | A | 175 | 193 | VEAIKEALMAHGLGNRVSV | HHHHHHHHHHTT-TTT-EE | aaaaaaaaaaavaaaabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a0c_A_246 | 1a0c | A | COCOBALT (II) ION | N - 265 |
1a0c_A_246 | 1a0c | A | COCOBALT (II) ION | E - 267 |
1a0d_A_244 | 1a0d | A | MNMANGANESE (II) ION | N - 263 |
1a0d_A_244 | 1a0d | A | MNMANGANESE (II) ION | E - 265 |
1h7n_A_185 | 1h7n | A | SHFLAEVULINIC ACID | Y - 207 |
1h7n_A_185 | 1h7n | A | SHFLAEVULINIC ACID | K - 210 |
1h7n_A_185 | 1h7n | A | ZNZINC ION | K - 210 |
1jcl_A_179 | 1jcl | A | HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE | K - 201 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1a0c_A_246 | 1a0c | A | CO1CO BINDING SITE 1 OF MOLECULE A | E - 267 |
1a0d_A_244 | 1a0d | A | MN1MN BINDING SITE 1 OF MOLECULE A | E - 265 |
1h7n_A_185 | 1h7n | A | AC1SHF BINDING SITE FOR CHAIN A | K - 210 |
Clusters included in this Subclass |
CLUSTER: HE.6.88 |