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Information on SUBCLASS 5.6.2
Subclass Accession number: 8570
Subclass: 5.6.2 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 19.5 +/- 20.7
Average RMSD (Å) : 0.520 +/- 0.217

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: phcLXcphX
(φψ)-conformation: aalaaaabb
Pattern: [AIV][AER][adnt][AIMV][KLM][AER][AFGV][IL][mqr][ADKNT][hmy][DGN][LV][ADEGK][DHKN][KRTY][FTV][gks][FV]
Conservation:1.016-0.004-1.3140.362-0.076-0.041-1.1842.165-0.595-0.838-0.3361.2031.763-0.8380.108-0.686-0.174-1.2500.717
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0c_A_2461a0c   A246264VANVLAFLRKYDLDKYFKVHHHHHHHHHHTT-TTTEEEaaaaaaaaaaalaaaabbb
1a0d_A_2441a0d   A244262VATALAFLQTYGLKDYFKFHHHHHHHHHHTT-GGGEEEaaaaaaaaaaavaaaabbb
1h7n_A_1851h7n   A186204IRDIKRGLINANLAHKTFVHHHHHHHHHHTT-TTT-EEaaaaaaaaaaalaaaabxb
1jcl_A_1791jcl   A182200ARIMMEVIRDMGVEKTVGFHHHHHHHHHHHT-TTT-EEaaaaaaaaaaavaaaabxb
1pv8_A_1741pv8   A175193VEAIKEALMAHGLGNRVSVHHHHHHHHHHTT-TTT-EEaaaaaaaaaaavaaaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a0c_A_2461a0c   A     COCOBALT (II) ION N - 265
1a0c_A_2461a0c   A     COCOBALT (II) ION E - 267
1a0d_A_2441a0d   A     MNMANGANESE (II) ION N - 263
1a0d_A_2441a0d   A     MNMANGANESE (II) ION E - 265
1h7n_A_1851h7n   A     SHFLAEVULINIC ACID Y - 207
1h7n_A_1851h7n   A     SHFLAEVULINIC ACID K - 210
1h7n_A_1851h7n   A     ZNZINC ION K - 210
1jcl_A_1791jcl   A     HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE K - 201
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a0c_A_2461a0c   A CO1CO BINDING SITE 1 OF MOLECULE AE - 267
1a0d_A_2441a0d   A MN1MN BINDING SITE 1 OF MOLECULE AE - 265
1h7n_A_1851h7n   A AC1SHF BINDING SITE FOR CHAIN AK - 210

Clusters included in this Subclass
CLUSTER: HE.6.88