Information on SUBCLASS 5.6.4 |
Subclass Accession number: 8572
Subclass: 5.6.4 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 31.4 +/- 16.4 Average RMSD (Å) : 0.433 +/- 0.115 Consensus geometry
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Consensus Sequence: | pXXLhppTh |
(φψ)-conformation: | aalaaaabb |
Pattern: | x | [FY] | [AG] | [DG] | x | [LV] | x | [EL] | [LM] | [D] | x | [AS] | [V] | [G] | [NQT] | [ILV] | [LMT] | [ANT] | [AL] | [IL] | [DGK] | [DES] | x | [GR] | [L] | [ALW] | [EN] | [DEN] | [T] | [LV] | [FIV] | [IY] | [F] | [ST] | [AST] |
Conservation: | -1.325 | 1.559 | 0.207 | 0.084 | -0.893 | 0.003 | -1.109 | -0.958 | 0.564 | 2.205 | -1.253 | 0.007 | 0.908 | 2.205 | -0.677 | 0.044 | -0.677 | -0.893 | -0.593 | 0.305 | -1.037 | -0.317 | -0.910 | -0.283 | 0.908 | -1.181 | 0.307 | -0.029 | 1.556 | -0.001 | -0.389 | -0.335 | 2.205 | 0.254 | -0.461 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1auk_*_245 | 1auk | - | 246 | 280 | PFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTA | HHHHHHHHHHHHHHHHHHHHHHTT-GGGEEEEEEE | aaaaaaaaaaaaaaaaaaaaaaalaaaabxbbbbb |
1fsu_*_261 | 1fsu | - | 265 | 299 | HYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFST | HHHHHHHHHHHHHHHHHHHHHHTT-GGGEEEEEEE | aaaaaaaaaaaaaaaaaaaaaaavaaaabbxbbbx |
1p49_A_307 | 1p49 | A | 307 | 341 | VYGDAVEEMDWSVGQILNLLDELRLANDTLIYFTS | HHHHHHHHHHHHHHHHHHHHHHTT-GGGEEEEEEE | aaaaaaaaaaaaaaaaaaaaaaalaaaabxbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1fsu_*_261 | 1fsu | * | NAGN-ACETYL-D-GLUCOSAMINE | L - 272 |
1fsu_*_261 | 1fsu | * | NAGN-ACETYL-D-GLUCOSAMINE | E - 275 |
1fsu_*_261 | 1fsu | * | NAGN-ACETYL-D-GLUCOSAMINE | A - 276 |
1fsu_*_261 | 1fsu | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 279 |
1p49_A_307 | 1p49 | A | NAGN-ACETYL-D-GLUCOSAMINE | Y - 308 |
1p49_A_307 | 1p49 | A | NAGN-ACETYL-D-GLUCOSAMINE | G - 309 |
1p49_A_307 | 1p49 | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 312 |
Clusters included in this Subclass |
CLUSTER: HE.5.240 |