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Information on SUBCLASS 5.8.1
Subclass Accession number: 8578
Subclass: 5.8.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 27.4 +/- 26.9
Average RMSD (Å) : 0.833 +/- 0.423

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXGhXXphh
(φψ)-conformation: aalppbabb
Pattern: [adnsv]x[fiklv][dknqr][dekqrsy][FGILMW]x[AEKNQ][aeknr][EG][filmv][AENPQ][iklmv][DHKQ][cgitv][FILV][gltv]
Conservation:-0.796-0.841-0.335-0.028-0.471-0.267-0.6270.291-0.2983.0030.1400.240-0.0210.715-1.1671.374-0.912
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b31_A_1831b31   A190206SHVKKWLAAGIPIDGIGHHHHHHHHTT----EEEaaaaaaaaavxxbabbb
1ble_*_881ble   -88104SDIVSLIEAGVPIKTVNHHHHHHHTTT----EEEaaaaaaaaavbwbabbx
1clx_A_1881clx   A195211NLVQRLLNNGVPIDGVGHHHHHHHHTT----EEEaaaaaaaaavxxxabbx
1e19_A_781e19   A96112ALKNELRKRGMEKKVVTHHHHHHHHTT----EEEaaaaaaaaavbbbxbbb
1exp_*_1781exp   -185201DLVKDFKARGVPLDCVGHHHHHHHHTT----EEEaaaaaaaaavxxbabbb
1f3t_A_2061f3t   A217233FVFDMGTELGFNMHILDHHHHHHHHTT----EEEaaaaaaaaavxxxabbb
1hiz_A_2111hiz   A217233NLVKQLKEEGVPIDGIGHHHHHHHHTT----EEEaaaaaaaaavxxbabbb
1i1w_A_1821i1w   A189205NRVKKWRAAGVPIDGIGHHHHHHHHTT----EEEaaaaaaaaavxxbabbb
1ig3_A_1201ig3   A127143VLQRKIEEKELQVDVIVHHHHHHHHTT---SEEEaaaaaaaaalxbbabbx
1od8_A_1801od8   A187203NMVRDFKQRGVPIDCVGHHHHHHHHHT----EEEaaaaaaaaavxxbabbb
1qj5_A_1121qj5   A122138MALQYWQAKGEARQRFLHHHHHHHHTT----EEEaaaaaaaaavbxbaxbb
1xyz_A_6961xyz   A703719NMIKSMKERGVPIDGVGHHHHHHHHTT----EEEaaaaaaaaavxxbabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i1w_A_1821i1w   A     EOHETHANOL R - 190
1i1w_A_1821i1w   A     EOHETHANOL G - 198
1i1w_A_1821i1w   A     EOHETHANOL V - 199
1i1w_A_1821i1w   A     EOHETHANOL P - 200
1i1w_A_1821i1w   A     EOHETHANOL I - 201
1i1w_A_1821i1w   A     EOHETHANOL D - 202
1ig3_A_1201ig3   A     VIB3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY -ETHYL)-4-METHYL-THIAZOL-3-IUM D - 120
1ig3_A_1201ig3   A     VIB3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY -ETHYL)-4-METHYL-THIAZOL-3-IUM K - 123
1qj5_A_1121qj5   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 112
1qj5_A_1121qj5   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 113
1qj5_A_1121qj5   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 114
1qj5_A_1121qj5   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 116
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od8_A_1801od8   A AC4NA BINDING SITE FOR CHAIN NN - 187
1od8_A_1801od8   A AC3NA BINDING SITE FOR CHAIN AR - 190
1od8_A_1801od8   A AC7IMD BINDING SITE FOR CHAIN AQ - 194
1od8_A_1801od8   A AC7IMD BINDING SITE FOR CHAIN AR - 195
1od8_A_1801od8   A AC7IMD BINDING SITE FOR CHAIN AG - 196

Clusters included in this Subclass
CLUSTER: HE.5.61
CLUSTER: HE.6.40
CLUSTER: HE.7.13