Information on SUBCLASS 5.8.1 |
Subclass Accession number: 8578
Subclass: 5.8.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 12 Average sequence ID (%) : 27.4 +/- 26.9 Average RMSD (Å) : 0.833 +/- 0.423 Consensus geometry
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Consensus Sequence: | XXGhXXphh |
(φψ)-conformation: | aalppbabb |
Pattern: | [adnsv] | x | [fiklv] | [dknqr] | [dekqrsy] | [FGILMW] | x | [AEKNQ] | [aeknr] | [EG] | [filmv] | [AENPQ] | [iklmv] | [DHKQ] | [cgitv] | [FILV] | [gltv] |
Conservation: | -0.796 | -0.841 | -0.335 | -0.028 | -0.471 | -0.267 | -0.627 | 0.291 | -0.298 | 3.003 | 0.140 | 0.240 | -0.021 | 0.715 | -1.167 | 1.374 | -0.912 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b31_A_183 | 1b31 | A | 190 | 206 | SHVKKWLAAGIPIDGIG | HHHHHHHHTT----EEE | aaaaaaaaavxxbabbb |
1ble_*_88 | 1ble | - | 88 | 104 | SDIVSLIEAGVPIKTVN | HHHHHHHTTT----EEE | aaaaaaaaavbwbabbx |
1clx_A_188 | 1clx | A | 195 | 211 | NLVQRLLNNGVPIDGVG | HHHHHHHHTT----EEE | aaaaaaaaavxxxabbx |
1e19_A_78 | 1e19 | A | 96 | 112 | ALKNELRKRGMEKKVVT | HHHHHHHHTT----EEE | aaaaaaaaavbbbxbbb |
1exp_*_178 | 1exp | - | 185 | 201 | DLVKDFKARGVPLDCVG | HHHHHHHHTT----EEE | aaaaaaaaavxxbabbb |
1f3t_A_206 | 1f3t | A | 217 | 233 | FVFDMGTELGFNMHILD | HHHHHHHHTT----EEE | aaaaaaaaavxxxabbb |
1hiz_A_211 | 1hiz | A | 217 | 233 | NLVKQLKEEGVPIDGIG | HHHHHHHHTT----EEE | aaaaaaaaavxxbabbb |
1i1w_A_182 | 1i1w | A | 189 | 205 | NRVKKWRAAGVPIDGIG | HHHHHHHHTT----EEE | aaaaaaaaavxxbabbb |
1ig3_A_120 | 1ig3 | A | 127 | 143 | VLQRKIEEKELQVDVIV | HHHHHHHHTT---SEEE | aaaaaaaaalxbbabbx |
1od8_A_180 | 1od8 | A | 187 | 203 | NMVRDFKQRGVPIDCVG | HHHHHHHHHT----EEE | aaaaaaaaavxxbabbb |
1qj5_A_112 | 1qj5 | A | 122 | 138 | MALQYWQAKGEARQRFL | HHHHHHHHTT----EEE | aaaaaaaaavbxbaxbb |
1xyz_A_696 | 1xyz | A | 703 | 719 | NMIKSMKERGVPIDGVG | HHHHHHHHTT----EEE | aaaaaaaaavxxbabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1i1w_A_182 | 1i1w | A | EOHETHANOL | R - 190 |
1i1w_A_182 | 1i1w | A | EOHETHANOL | G - 198 |
1i1w_A_182 | 1i1w | A | EOHETHANOL | V - 199 |
1i1w_A_182 | 1i1w | A | EOHETHANOL | P - 200 |
1i1w_A_182 | 1i1w | A | EOHETHANOL | I - 201 |
1i1w_A_182 | 1i1w | A | EOHETHANOL | D - 202 |
1ig3_A_120 | 1ig3 | A | VIB3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY -ETHYL)-4-METHYL-THIAZOL-3-IUM | D - 120 |
1ig3_A_120 | 1ig3 | A | VIB3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY -ETHYL)-4-METHYL-THIAZOL-3-IUM | K - 123 |
1qj5_A_112 | 1qj5 | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 112 |
1qj5_A_112 | 1qj5 | A | PLPPYRIDOXAL-5'-PHOSPHATE | S - 113 |
1qj5_A_112 | 1qj5 | A | PLPPYRIDOXAL-5'-PHOSPHATE | V - 114 |
1qj5_A_112 | 1qj5 | A | PLPPYRIDOXAL-5'-PHOSPHATE | V - 116 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1od8_A_180 | 1od8 | A | AC4NA BINDING SITE FOR CHAIN N | N - 187 |
1od8_A_180 | 1od8 | A | AC3NA BINDING SITE FOR CHAIN A | R - 190 |
1od8_A_180 | 1od8 | A | AC7IMD BINDING SITE FOR CHAIN A | Q - 194 |
1od8_A_180 | 1od8 | A | AC7IMD BINDING SITE FOR CHAIN A | R - 195 |
1od8_A_180 | 1od8 | A | AC7IMD BINDING SITE FOR CHAIN A | G - 196 |
Clusters included in this Subclass |
CLUSTER: HE.5.61 |
CLUSTER: HE.6.40 |
CLUSTER: HE.7.13 |