Information on SUBCLASS 5.11.1 |
Subclass Accession number: 8584
Subclass: 5.11.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 22.1 +/- 21.7 Average RMSD (Å) : 0.691 +/- 0.327 Consensus geometry
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Consensus Sequence: | XppXhXGhX |
(φψ)-conformation: | aabpppgbb |
Pattern: | x | [adkqr] | [almt] | x | [ehknqrsy] | [dek] | [DHPST] | [pv] | [adps] | [DEG] | [fiktv] | [stv] | [afglw] |
Conservation: | -0.595 | -0.352 | -0.036 | -0.605 | -0.322 | 0.151 | 0.478 | 0.831 | -0.723 | 2.875 | -0.109 | -0.939 | -0.653 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a5t_*_122 | 1a5t | - | 129 | 141 | LKTLEEPPAETWF | HHHHTS--TTEEE | aaaaabpxplbbb |
1gkz_A_155 | 1gkz | A | 177 | 188 | HLALHEDKPDFV. | HHHTTS--TTEE. | aaaaaxbbxvbb. |
1j7d_B_6 | 1j7d | B | 13 | 25 | QRLLAEPVPGIKA | HHHTTS--TTEEE | aaaaIbpxxvbbb |
1jat_A_6 | 1jat | A | 13 | 25 | EKLVSDPVPGITA | HHHHHS--TTEEE | aaaaabpxpvbbb |
1lk9_A_166 | 1lk9 | A | 170 | 182 | EQTKYFDKKGYVW | HHHHHS--TTEEE | aaaaaxxxxgbbx |
1mv8_A_404 | 1mv8 | A | 404 | 416 | VDLVNKTPSGKKL | HHHHHS--TT-EE | aaaaabxwxvbbb |
1pzv_A_5 | 1pzv | A | 13 | 25 | ADMRRVPVDGFSA | HHHHHS--TTEEE | aaaaabxxpvbbb |
1q34_A_4 | 1q34 | A | 14 | 26 | KKLQEDPPAGVSG | HHHHHS--TTEEE | aaaaabxxplbbe |
1u9a_A_1 | 1u9a | A | 14 | 26 | KAWRKDHPFGFVA | HHHHHS--TT-EE | aaaaabbpxgxbb |
2aak_*_4 | 2aak | - | 14 | 26 | KRLQQDPPAGISG | HHHHHS--TTEEE | aaaaabxxpvbbb |
2ucz_*_3 | 2ucz | - | 14 | 26 | QQLIKDSPPGIVA | HHHHHS--TTEEE | aaaaabxppvbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gkz_A_155 | 1gkz | A | XEXENON | I - 170 |
1gkz_A_155 | 1gkz | A | XEXENON | R - 171 |
1gkz_A_155 | 1gkz | A | XEXENON | A - 174 |
1lk9_A_166 | 1lk9 | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | V - 167 |
1lk9_A_166 | 1lk9 | A | PLPPYRIDOXAL-5'-PHOSPHATE | F - 168 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | R - 169 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | E - 170 |
1lk9_A_166 | 1lk9 | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | E - 170 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | Q - 171 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | K - 173 |
1lk9_A_166 | 1lk9 | A | NAGN-ACETYL-D-GLUCOSAMINE | Y - 174 |
1lk9_A_166 | 1lk9 | A | FCAALPHA-D-FUCOSE | Y - 174 |
Clusters included in this Subclass |
CLUSTER: HE.5.71 |
CLUSTER: HE.6.116 |