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Information on SUBCLASS 0.1.1
Subclass Accession number: 859
Subclass: 0.1.1 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 57

Average sequence ID (%) : 10.4 +/- 13.9
Average RMSD (Å) : 0.523 +/- 0.196

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XpXX
(φψ)-conformation: abaa
Pattern: xx[acfgilpvwy][adegknqrst][cdehnrst]xxx[afgilmvwy]
Conservation:0.542-0.673-0.6110.3751.864-1.253-0.687-0.5280.972
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_4511a8i   -452460VNGVARIHSEEESSHHHHbbxabaaaa
1a99_A_561a99   A6068DVFDSNEVLEEES-HHHHbbbabaaaa
1aoe_A_901aoe   A9199IHASSIESSEEESSHHHHbbbabaaaa
1bs0_A_1011bs0   A103111LLFISGFAAEEES-HHHHbxbabaaaa
1btn_*_341btn   -3644GFYKDAKSAEEESSHHHHbbbabaaaa
1cjx_A_2401cjx   A243251FLTDDLVKTEEES-HHHHbxbabaaaa
1cjx_A_761cjx   A8290FRVKDSQKAEEES-HHHHbxbabaaaa
1cl1_A_791cl1   A8189VLFPCGAAAEEESSHHHHbbbabaaaa
1cs1_A_691cs1   A7179VLTNTGMSAEEESSHHHHbxbabaaaa
1d2f_A_901d2f   A9199VYGPSVIYMEEES-HHHHbbbabaaaa
1dbw_A_291dbw   A3139KMHQSAEAFEEES-HHHHbxbabaaaa
1elu_A_821elu   A8391TITDNVTTGEEESSHHHHbxbabaaaa
1f1u_A_151f1u   A2331IVVTDLAKSEEES-HHHHbxbabaaaa
1f1u_A_731f1u   A7987YRVKSPAEVEEESSHHHHbxbabaaaa
1fc4_A_1041fc4   A106114ILYSSCFDAEEES-HHHHbxbabaaaa
1gc0_A_821gc0   A8492LALASGMGAEEESSHHHHbbbabaaaa
1gg4_A_771gg4   A7886LIVKDTRLAEEES-HHHHbxbabaaaa
1gjw_A_861gjw   A8694VYGSLPRTTEEEE-HHHHxbxbbaaaa
1gux_B_7491gux   B749755..YDSIIVF..EE-HHHH..bbxaaaa
1gw0_A_4971gw0   A501509FHCHIAWHVEEE--HHHHbbxaxaaaa
1hxn_*_4041hxn   -406414YCYRHVDKLEEESSHHHHbbbabaaaa
1i39_A_171i39   A2230VACSDEDRLEEES-HHHHbbbabaaaa
1ibj_A_1501ibj   A152160FCFTSGMAAEEESSHHHHbbbabaaaa
1j1u_A_2651j1u   A265273LTVNSYEELEEESSHHHHbbbabaaaa
1j8u_A_3851j8u   A387395YVAESFNDAEEES-HHHHbbxabaaaa
1jbk_A_3101jbk   A311319VGATTLDEYEEEE-HHHHbbbbxaaaa
1jc4_A_121jc4   A1523YACPDADEAEE-S-HHHHbxbabaaaa
1jfx_A_1361jfx   A136144VIYTTASWWEEEE-HHHHxxbbbaaaa
1js3_A_1411js3   A143151VIQGSASEAEEES-HHHHbxbabaaaa
1js3_A_3121js3   A314322MWVKRRTDLEEES-HHHHbbbabaaaa
1k8k_A_821k8k   A8289.IVEDWDLM.EES-HHHH.bxabaaaa
1lr7_A_1091lr7   A109116.TYRNECAL.EESSHHHH.xbabaaaa
1ltz_A_2401ltz   A242250FVIDSFKQLEEES-HHHHbbxabaaaa
1m2o_A_181m2o   A1826VFPSTRSDAEEESSHHHHbxxabaaaa
1m66_A_1661m66   A170178IASADINVAEE-SSHHHHbbbaxaaaa
1mjf_A_991mjf   A102110MVEIDEDVIEEES-HHHHbbbabaaaa
1mna_A_1181mna   A118125.LPADLDTA.EESSHHHH.xxabaaaa
1n0u_A_5281n0u   A530538VAGTGELHLEEESSHHHHbbbabaaaa
1o69_A_491o69   A5159LALNSATAAEEES-HHHHbxbabaaaa
1p3c_A_411p3c   A4149KILTNGHCVEEEE-HHHHbbxbxaaaa
1plq_*_21plq   -412AKFEEASLFEEESSHHHHbbxabaaaa
1pot_*_521pot   -5765STYESNETMEEES-HHHHbbbabaaaa
1pxw_A_821pxw   A8391IYVPSKKELEEES-HHHHbbbabaaaa
1q88_A_3151q88   A315322.KYDSWDKY.EES-HHHH.bbabaaaa
1q8b_A_661q8b   A6775EIWENEEAVEEESSHHHHbbbabaaaa
1qis_A_2671qis   A272280LVAADSETVEE-SSHHHHbbbabaaaa
1qy6_A_451qy6   A4553TLLTNKHVVEEEE-HHHHbbbbxaaaa
1r0r_I_301r0r   I3037.TYGNKCNF.EESSHHHH.xbabaaaa
1r0t_B_371r0t   B3744.TYDNECVL.EESSHHHH.xbabaaaa
1rlk_A_531rlk   A5664VKVNDLDEIEEESSHHHHbbbabaaaa
1ro2_A_1071ro2   A110118MDFESKEKLEEES-HHHHxbxabaaaa
1tgs_I_301tgs   I3037.TYSNECVL.EESSHHHH.xxabaaaa
1uc2_A_4341uc2   A435443VRAASMRVVEEES-HHHHbbbabaaaa
1uir_A_1031uir   A106114MVDIDGELVEEES-HHHHbbbabaaaa
1vns_*_4731vns   -474482RHFDSAWELEEES-HHHHbbbabaaaa
2dap_*_2582dap   -265273LKLDRNPDFEEESBHHHHbbbabaaaa
4cd2_A_934cd2   A93101HSAKSLDHAEEESSHHHHxbbabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8i_*_4511a8i   *     GLSBETA-D-GLUCOPYRANOSE SPIROHYDANTOIN V - 455
1a99_A_561a99   A     PUT1,4-DIAMINOBUTANE N - 65
1aoe_A_901aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 93
1aoe_A_901aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 94
1aoe_A_901aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 95
1aoe_A_901aoe   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 96
1cjx_A_761cjx   A     EMCETHYL MERCURY ION C - 78
1cjx_A_761cjx   A     EMCETHYL MERCURY ION G - 79
1cjx_A_2401cjx   A     FE2FE (II) ION H - 240
1cjx_A_2401cjx   A     ACTACETATE ION H - 240
1cjx_A_2401cjx   A     FE2FE (II) ION A - 242
1cl1_A_791cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) P - 84
1cl1_A_791cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) C - 85
1cl1_A_791cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 86
1cl1_A_791cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) A - 87
1cl1_A_791cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) A - 88
1cl1_A_791cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) A - 89
1cl1_A_791cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) V - 90
1cs1_A_691cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 75
1cs1_A_691cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 76
1cs1_A_691cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 77
1cs1_A_691cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 78
1cs1_A_691cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) I - 80
1d2f_A_901d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE P - 94
1d2f_A_901d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 95
1d2f_A_901d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 96
1d2f_A_901d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 97
1d2f_A_901d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 98
1dbw_A_291dbw   A     15PPOLYETHYLENE GLYCOL (N=34) A - 29
1elu_A_821elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID D - 86
1elu_A_821elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID N - 87
1elu_A_821elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID V - 88
1elu_A_821elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID T - 89
1elu_A_821elu   A     CSSS-MERCAPTOCYSTEINE T - 89
1elu_A_821elu   A     PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID T - 90
1fc4_A_1041fc4   A     MSESELENOMETHIONINE D - 104
1fc4_A_1041fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 109
1fc4_A_1041fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 110
1fc4_A_1041fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 111
1fc4_A_1041fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 112
1fc4_A_1041fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 113
1fc4_A_1041fc4   A     MSESELENOMETHIONINE N - 115
1fc4_A_1041fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 115
1gc0_A_821gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 88
1gc0_A_821gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 89
1gc0_A_821gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 90
1gc0_A_821gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 91
1gg4_A_771gg4   A     MSESELENOMETHIONINE F - 87
1gg4_A_771gg4   A     MSESELENOMETHIONINE L - 90
1gg4_A_771gg4   A     MSESELENOMETHIONINE A - 91
1gg4_A_771gg4   A     MSESELENOMETHIONINE V - 94
1gw0_A_4971gw0   A     CUCOPPER (II) ION L - 500
1gw0_A_4971gw0   A     O2OXYGEN MOLECULE H - 502
1gw0_A_4971gw0   A     CUCOPPER (II) ION H - 502
1gw0_A_4971gw0   A     CUCOPPER (II) ION C - 503
1gw0_A_4971gw0   A     O2OXYGEN MOLECULE H - 504
1gw0_A_4971gw0   A     CUCOPPER (II) ION H - 504
1gw0_A_4971gw0   A     CUCOPPER (II) ION I - 505
1gw0_A_4971gw0   A     CUCOPPER (II) ION H - 508
1gw0_A_4971gw0   A     CUCOPPER (II) ION V - 509
1ibj_A_1501ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 156
1ibj_A_1501ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 157
1ibj_A_1501ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE M - 158
1ibj_A_1501ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 159
1ibj_A_1501ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE L - 161
1jc4_A_121jc4   A     MSESELENOMETHIONINE H - 12
1jc4_A_121jc4   A     MSESELENOMETHIONINE V - 13
1jc4_A_121jc4   A     MSESELENOMETHIONINE A - 14
1jc4_A_121jc4   A     MSESELENOMETHIONINE Y - 15
1jc4_A_121jc4   A     MSESELENOMETHIONINE A - 16
1jc4_A_121jc4   A     MSESELENOMETHIONINE C - 17
1jc4_A_121jc4   A     MSESELENOMETHIONINE P - 18
1jc4_A_121jc4   A     MSESELENOMETHIONINE D - 19
1jc4_A_121jc4   A     MSESELENOMETHIONINE A - 20
1jc4_A_121jc4   A     MSESELENOMETHIONINE A - 23
1jc4_A_121jc4   A     MSESELENOMETHIONINE S - 24
1jc4_A_121jc4   A     MSESELENOMETHIONINE K - 25
1jc4_A_121jc4   A     MSESELENOMETHIONINE Y - 27
1jc4_A_121jc4   A     MSESELENOMETHIONINE Q - 28
1jc4_A_121jc4   A     MSESELENOMETHIONINE F - 31
1js3_A_1411js3   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 146
1js3_A_1411js3   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 147
1js3_A_1411js3   A     142CARBIDOPA S - 147
1js3_A_1411js3   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 148
1js3_A_1411js3   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 149
1js3_A_1411js3   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 150
1js3_A_1411js3   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 152
1js3_A_3121js3   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 312
1n0u_A_5281n0u   A     SO1[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA., 7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID I - 529
1n0u_A_5281n0u   A     SO1[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA., 7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID A - 531
1o69_A_491o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE N - 54
1o69_A_491o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE S - 55
1o69_A_491o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE A - 56
1o69_A_491o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE T - 57
1o69_A_491o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE A - 58
1o69_A_491o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE L - 60
1plq_*_21plq   *     HGMERCURY (II) ION L - 2
1plq_*_21plq   *     HGMERCURY (II) ION E - 3
1plq_*_21plq   *     HGMERCURY (II) ION D - 17
1plq_*_21plq   *     HGMERCURY (II) ION G - 18
1plq_*_21plq   *     HGMERCURY (II) ION F - 19
1pot_*_521pot   *     SPDSPERMIDINE N - 62
1q8b_A_661q8b   A     MSESELENOMETHIONINE W - 66
1q8b_A_661q8b   A     MSESELENOMETHIONINE I - 68
1q8b_A_661q8b   A     MSESELENOMETHIONINE W - 69
1q8b_A_661q8b   A     MSESELENOMETHIONINE E - 70
1q8b_A_661q8b   A     MSESELENOMETHIONINE N - 71
1qis_A_2671qis   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 267
1qis_A_2671qis   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 268
1rlk_A_531rlk   A     GOLGLYCEROL K - 53
1rlk_A_531rlk   A     GOLGLYCEROL I - 54
1rlk_A_531rlk   A     GOLGLYCEROL V - 55
1rlk_A_531rlk   A     GOLGLYCEROL V - 56
1ro2_A_1071ro2   A     MNMANGANESE (II) ION D - 111
2dap_*_2582dap   *     API2,6-DIAMINOPIMELIC ACID N - 270
2dap_*_2582dap   *     API2,6-DIAMINOPIMELIC ACID T - 274
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1cjx_A_2401cjx   A ASAIRON BINDING SITEH - 240
1gw0_A_4971gw0   A AC1O2 BINDING SITE FOR CHAIN AH - 502
1gw0_A_4971gw0   A AC2CU BINDING SITE FOR CHAIN AC - 503
1gw0_A_4971gw0   A AC1O2 BINDING SITE FOR CHAIN AH - 504
1gw0_A_4971gw0   A AC2CU BINDING SITE FOR CHAIN AH - 508

Clusters included in this Subclass
CLUSTER: EH.1.13
CLUSTER: EH.1.88
CLUSTER: EH.2.9
CLUSTER: EH.3.14