Information on SUBCLASS 5.24.1 |
Subclass Accession number: 8602
Subclass: 5.24.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 9.3 +/- 10.5 Average RMSD (Å) : 1.067 +/- 0.175 Consensus geometry
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Consensus Sequence: | XXcXXXXhh |
(φψ)-conformation: | aalbpbpbb |
Pattern: | x | x | [dgnq] | [afiv] | [fhiv] | [nqs] | [aeqr] | [fvw] | x | [akqs] | x | [aclmt] | [GNR] | [ik] | [DEPS] | x | x | [ly] | [aglvy] | x |
Conservation: | -0.416 | -1.270 | -0.123 | -0.390 | -0.201 | 0.452 | 0.619 | -0.051 | -0.277 | 0.637 | -0.687 | 0.089 | 2.892 | 0.197 | 1.338 | -0.355 | -0.947 | 0.992 | -0.998 | -1.503 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gvf_A_28 | 1gvf | A | 30 | 49 | TIQAILEVCSEMRSPVILAG | HHHHHHHHHHHHT---EEEE | aaaaaaaaaaaalbwbbbbb |
1i24_A_54 | 1i24 | A | 54 | 73 | IHDRISRWKALTGKSIELYV | HHHHHHHHHHHH----EEEE | aaaaaaaaaaaavxbxxbbb |
1lg2_A_151 | 1lg2 | A | 162 | 181 | LANAFQQEAQTSGKERLLLS | HHHHHHHHHHHH-S---EEE | aaaaaaaaaaaavxxxxxbb |
1nyt_A_16 | 1nyt | A | 16 | 35 | SPFIHQQFAQQLNIEHPYGR | HHHHHHHHHHHHT----EEE | aaaaaaaaaaaalbxbwbbb |
1req_B_521 | 1req | B | 527 | 546 | REGFSSPVWHIAGIDTPQVE | HHHHHHHHHHHTT-B--EEE | aaaaaaaaaaaavxxbwbbx |
1udb_*_269 | 1udb | - | 269 | 288 | VLDVVNAFSKACGKPVNYHF | HHHHHHHHHHHHTS---EEE | aaaaaaaaaaaavbxxxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gvf_A_28 | 1gvf | A | EGLETHYLENE GLYCOL | Q - 32 |
1gvf_A_28 | 1gvf | A | EGLETHYLENE GLYCOL | E - 36 |
1gvf_A_28 | 1gvf | A | EGLETHYLENE GLYCOL | S - 43 |
1gvf_A_28 | 1gvf | A | EGLETHYLENE GLYCOL | P - 44 |
1gvf_A_28 | 1gvf | A | EGLETHYLENE GLYCOL | V - 45 |
1gvf_A_28 | 1gvf | A | EGLETHYLENE GLYCOL | I - 46 |
1gvf_A_28 | 1gvf | A | EGLETHYLENE GLYCOL | L - 47 |
1lg2_A_151 | 1lg2 | A | EDO1,2-ETHANEDIOL | A - 183 |
1lg2_A_151 | 1lg2 | A | EDO1,2-ETHANEDIOL | V - 184 |
1lg2_A_151 | 1lg2 | A | EDO1,2-ETHANEDIOL | P - 185 |
1nyt_A_16 | 1nyt | A | DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE | S - 16 |
1nyt_A_16 | 1nyt | A | DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE | H - 20 |
1nyt_A_16 | 1nyt | A | DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE | Y - 33 |
1udb_*_269 | 1udb | * | UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE | V - 269 |
Clusters included in this Subclass |
CLUSTER: HE.4.192 |
CLUSTER: HE.5.272 |
CLUSTER: HE.6.186 |