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Information on SUBCLASS 5.28.1
Subclass Accession number: 8606
Subclass: 5.28.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 21.3 +/- 18.7
Average RMSD (Å) : 0.925 +/- 0.275

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: phGXchppV
(φψ)-conformation: aagbbbabb
Pattern: xxxx[DT][ALMW][LM][AEKT][DEKS]x[GK]x[DKN][LMV][DT][DSY][V][GIL]
Conservation:-0.708-1.056-0.764-1.0081.321-0.5701.370-0.5210.014-0.8620.988-1.1530.2660.7021.168-0.3561.959-0.790
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ak2_*_1061ak2   -110127EMLDDLMEKRKEKLDSVIHHHHHHHHHHT----EEEaaaaaaaaaavbbxabbx
1d4d_A_2151d4d   A216233SDSIDWLTSMGADMTDVGHHHHHHHHHHT----EEEaaaaaaaaaagxbbaxbb
1e4v_A_901e4v   A90107IPQADAMKEAGINVDYVLHHHHHHHHHTT---SEEEaaaaaaaaaavbbbabbb
1zin_*_901zin   -94111EALETMLADIGRKLDYVIHHHHHHHHHTT----EEEaaaaaaaaaavbbxabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4v_A_901e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Q - 92
1e4v_A_901e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE F - 109

Clusters included in this Subclass
CLUSTER: HE.6.98