Logo
Information on SUBCLASS 5.29.1
Subclass Accession number: 8607
Subclass: 5.29.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 76.1 +/- 0.5
Average RMSD (Å) : 0.150 +/- 0.058

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: RXpGXhGRI
(φψ)-conformation: aallapabb
Pattern: [L][G][AS][H][ATV][AV][G][E][A][G][KR][R][LT][EN][G]x[IV][EG][R][I][T][G][L]
Conservation:-0.0511.031-0.8392.112-1.435-1.1121.0310.490-0.0511.031-0.3020.490-1.278-0.6621.031-1.908-0.320-1.1640.490-0.0510.4901.031-0.051
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bu8_A_1531bu8   A153175LGAHVVGEAGRRLEGHVGRITGLHHHHHHHHHHHHTTT-SSEEEEEaaaaaaaaaaaaalvaxabbbxb
1eth_A_1541eth   A154176LGSHAAGEAGRRTNGTIERITGLHHHHHHHHHHHHTTT-SSEEEEEaaaaaaaaaaaaallaxabbbbx
1gpl_*_1531gpl   -153175LGAHTAGEAGKRLNGLVGRITGLHHHHHHHHHHHTTTT-SSEEEEEaaaaaaaaaaaaalvaxabbbxx
1lpb_B_1531lpb   B153175LGAHAAGEAGRRTNGTIGRITGLHHHHHHHHHHHTTTT-SSEEEEEaaaaaaaaaaaaallaxabbbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1eth_A_1541eth   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE L - 154
1eth_A_1541eth   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE G - 155
1eth_A_1541eth   A     CACALCIUM ION G - 160
1eth_A_1541eth   A     CACALCIUM ION E - 161
1eth_A_1541eth   A     BMABETA-D-MANNOSE E - 161
1eth_A_1541eth   A     CACALCIUM ION R - 164
1eth_A_1541eth   A     NAGN-ACETYL-D-GLUCOSAMINE R - 164
1eth_A_1541eth   A     BMABETA-D-MANNOSE R - 164
1eth_A_1541eth   A     NAGN-ACETYL-D-GLUCOSAMINE R - 165
1eth_A_1541eth   A     BMABETA-D-MANNOSE R - 165
1eth_A_1541eth   A     NAGN-ACETYL-D-GLUCOSAMINE T - 166
1eth_A_1541eth   A     BMABETA-D-MANNOSE T - 166
1eth_A_1541eth   A     NAGN-ACETYL-D-GLUCOSAMINE N - 167
1eth_A_1541eth   A     BMABETA-D-MANNOSE N - 167
1eth_A_1541eth   A     NAGN-ACETYL-D-GLUCOSAMINE G - 168
1eth_A_1541eth   A     NAGN-ACETYL-D-GLUCOSAMINE T - 169
1gpl_*_1531gpl   *     CACALCIUM ION G - 159
1gpl_*_1531gpl   *     CACALCIUM ION E - 160
1gpl_*_1531gpl   *     CACALCIUM ION K - 163
1lpb_B_1531lpb   B     MUPMETHOXYUNDECYLPHOSPHINIC ACID L - 153
1lpb_B_1531lpb   B     MUPMETHOXYUNDECYLPHOSPHINIC ACID G - 154
1lpb_B_1531lpb   B     CACALCIUM ION R - 163

Clusters included in this Subclass
CLUSTER: HE.6.134