Information on SUBCLASS 5.47.1 |
Subclass Accession number: 8625
Subclass: 5.47.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 38.1 +/- 27.0 Average RMSD (Å) : 1.033 +/- 0.404 Consensus geometry
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Consensus Sequence: | XLXhpcXXh |
(φψ)-conformation: | aalpblppb |
Pattern: | [PQ] | [KY] | [AV] | [AV] | [AGI] | [TV] | [L] | x | [AY] | [IL] | [KL] | x | [L] | [GR] | [PV] | [KQ] | [GN] | [IK] | x | [GL] | [G] |
Conservation: | 0.233 | -0.121 | -0.068 | -0.068 | -1.188 | 0.079 | 1.345 | -0.628 | -0.332 | 0.638 | -0.628 | -1.030 | 1.345 | -0.205 | -0.332 | 0.644 | 0.822 | -0.981 | -1.109 | -1.187 | 2.770 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e5d_A_320 | 1e5d | A | 320 | 340 | PYVAGTLQYIKGLRPQNKIGG | HHHHHHHHHHHHT---S-EEE | aaaaaaaaaaaaalxblbxxb |
1gnl_A_488 | 1gnl | A | 488 | 508 | QKAVIVLLALLSLGVKNIHLG | HHHHHHHHHHHHTT----EEE | aaaaaaaaaaaaavxbvxxbb |
1gnt_A_495 | 1gnt | A | 495 | 515 | QKAVAVLLALLFLGVKGIRLG | HHHHHHHHHHHHTT--S-EEE | aaaaaaaaaaaaavxbvxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e5d_A_320 | 1e5d | A | FMNFLAVIN MONONUCLEOTIDE | S - 344 |
1e5d_A_320 | 1e5d | A | FMNFLAVIN MONONUCLEOTIDE | F - 345 |
1gnl_A_488 | 1gnl | A | FS4IRON/SULFUR CLUSTER | Q - 488 |
1gnl_A_488 | 1gnl | A | FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER | Q - 488 |
1gnl_A_488 | 1gnl | A | FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER | K - 489 |
1gnl_A_488 | 1gnl | A | FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER | A - 490 |
1gnl_A_488 | 1gnl | A | FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER | V - 491 |
1gnt_A_495 | 1gnt | A | FS4IRON/SULFUR CLUSTER | Q - 495 |
1gnt_A_495 | 1gnt | A | FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER | Q - 495 |
1gnt_A_495 | 1gnt | A | FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER | K - 496 |
1gnt_A_495 | 1gnt | A | FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER | A - 497 |
1gnt_A_495 | 1gnt | A | FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER | V - 498 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e5d_A_320 | 1e5d | A | FMAFMN BINDING SITE FOR CHAIN A | F - 345 |
1gnt_A_495 | 1gnt | A | FSOFSO BINDING SITE FOR CHAIN A | K - 496 |
Clusters included in this Subclass |
CLUSTER: HE.5.254 |