ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.18.1

Subclass Accession number: 8662
Subclass: 6.18.1

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 21.8 +/- 19.2
Average RMSD (Å) : 0.840 +/- 0.251

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XLchXXphXh
(φψ)-conformation:	aalppaapbb

Pattern:	[AIV]	x	[DEKTY]	x	[FL]	x	[DHK]	x	[L]	[GNQ]	[LV]	[KPRS]	[ENPS]	[DEHNS]	[AVWY]	[AKV]	x
Conservation:	0.369	-1.245	-0.834	-1.320	1.145	-0.423	0.187	-0.818	2.604	0.699	1.255	-0.166	-0.139	0.175	-0.543	-0.397	-0.550

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bjn_A_44	1bjn	A	53	69	AEKDFRDLLNVPSNYKV	HHHHHHHHHT--TTEEE	aaaaaaaaalxpaabbb
1cmx_A_15	1cmx	A	17	33	VFTNFAHKLGLKNEWAY	HHHHHHHHHTB-TTEEE	aaaaaaaaaNppaabbx
1ee0_A_145	1ee0	A	145	161	ADYQLVKLLGLSPSVKR	HHHHHHHHHT--TT-EE	aaaaaaaaavxpaaxxb
1hzp_A_248	1hzp	A	250	266	INELLVKNLQLRPDAVV	HHHHHHHHTT--TT-EE	aaaaaaaaavxxaaxxb
1mzj_A_261	1mzj	A	263	279	IIDVLVDRLGVPEHVVV	HHHHHHHHHT--TTSEE	aaaaaaaaavxwaaxxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hzp_A_248	1hzp	A	GOLGLYCEROL	S - 248
1hzp_A_248	1hzp	A	DAOLAURIC ACID	R - 249
1hzp_A_248	1hzp	A	GOLGLYCEROL	R - 249
1hzp_A_248	1hzp	A	DAOLAURIC ACID	I - 250
1hzp_A_248	1hzp	A	GOLGLYCEROL	E - 252
1hzp_A_248	1hzp	A	GOLGLYCEROL	V - 255
1hzp_A_248	1hzp	A	GOLGLYCEROL	K - 256
1hzp_A_248	1hzp	A	GOLGLYCEROL	Q - 259
1hzp_A_248	1hzp	A	GOLGLYCEROL	L - 260
1hzp_A_248	1hzp	A	GOLGLYCEROL	R - 261
1hzp_A_248	1hzp	A	GOLGLYCEROL	P - 262
1hzp_A_248	1hzp	A	GOLGLYCEROL	D - 263
1hzp_A_248	1hzp	A	GOLGLYCEROL	V - 265
1mzj_A_261	1mzj	A	COACOENZYME A	R - 262
1mzj_A_261	1mzj	A	COACOENZYME A	I - 263

Clusters included in this Subclass

CLUSTER: HE.5.185

CLUSTER: HE.6.118