ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.20.1

Subclass Accession number: 8664
Subclass: 6.20.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 67.3 +/- 8.6
Average RMSD (Å) : 0.400 +/- 0.183

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	NchPLhpPWX
(φψ)-conformation:	aapappbabp

Pattern:	[E]	x	x	[A]	[ST]	x	[NY]	[L]	[NS]	[A]	[IM]	[N]	x	[CV]	[P]	[L]	[ILP]	[KR]	[P]	[W]	[AK]	[L]	[ST]	[F]	[S]	[Y]
Conservation:	0.469	-0.998	-1.109	0.051	-0.471	-1.281	-0.648	0.051	-0.235	0.051	-0.483	0.887	-1.319	-0.168	1.305	0.051	-1.302	-0.157	1.305	2.977	-0.882	0.051	-0.391	0.887	0.051	1.305

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ado_A_276	1ado	A	276	301	EEEASINLNAINKCPLLKPWALTFSY	HHHHHHHHHHHHH-SS---SEEEEEE	aaaaaaaaaaaaapaxxbabxbbbbx
1f2j_A_286	1f2j	A	286	311	EVMASEYLNAMNNCPLPRPWKLTFSY	HHHHHHHHHHHTT--S---SEEEEEE	aaaaaaaaaaaaaxaxxbaxxbbbbb
1fba_A_276	1fba	A	276	301	EEEATVNLSAINNVPLIRPWALTFSY	HHHHHHHHHHHTT-SS---SEEEEEE	aaaaaaaaaaaaaxabxbabxbbbbb
1fdj_A_1276	1fdj	A	1276	1301	EEDATLNLNAINLCPLPKPWKLSFSY	HHHHHHHHHHHHH--S---SEEEEEE	aaaaaaaaaaaaapaxwbabxbbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ado_A_276	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	S - 300
1ado_A_276	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	Y - 301
1fdj_A_1276	1fdj	A	2FP1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)	S - 1300
1fdj_A_1276	1fdj	A	2FP1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)	Y - 1301

Clusters included in this Subclass