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Information on SUBCLASS 6.28.1
Subclass Accession number: 8672
Subclass: 6.28.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 9.5 +/- 10.6
Average RMSD (Å) : 1.450 +/- 0.520

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXXXcppXpX
(φψ)-conformation: aapaapapbb
Pattern: xxxxx[DEP][CDN]x[HNS][ATV]xxx[ILT]
Conservation:-1.078-1.146-0.764-0.764-0.7641.4060.633-0.6112.0660.873-0.060-0.093-0.5340.834
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i7p_A_1831i7p   A192205AVLKDPNDHTVCYLHHHH-TT---EEEEaaaaxaaxaxbbbb
1jqk_A_3431jqk   A343356LPRIAECFHTQIITHHHHHHTSS-EEEEaaaaaaabapbbbx
1meo_A_141meo   A1932DSTREPNSSAQIDIHHHHSTT-S-EEEEaaaaxaaxabbxab
1pja_A_1121pja   A120133LLSVMDDHNVDSFIHHHH-TT--EEEEEaaaabaaxaxaxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i7p_A_1831i7p   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 184
1i7p_A_1831i7p   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 185
1i7p_A_1831i7p   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 210
1meo_A_141meo   A     PO4PHOSPHATE ION L - 14
1meo_A_141meo   A     PO4PHOSPHATE ION Q - 15
1meo_A_141meo   A     PO4PHOSPHATE ION A - 16
1meo_A_141meo   A     PO4PHOSPHATE ION L - 17
1pja_A_1121pja   A     GOLGLYCEROL Q - 112

Clusters included in this Subclass
CLUSTER: HE.5.220