ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.38.1

Subclass Accession number: 8682
Subclass: 6.38.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 37.2 +/- 14.5
Average RMSD (Å) : 0.567 +/- 0.153

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	ppXphcchph
(φψ)-conformation:	aalbaplpbb

Pattern:	[P]	[CIT]	[Q]	[AIT]	[L]	[AL]	[D]	[LY]	[FLM]	[T]	[IL]	[QW]	[E]	[HKT]	[KQY]	[GS]	[RST]	[IL]	[DK]	[GN]	[LV]	[HKT]	[LV]	[ASV]	[MWY]	[IV]
Conservation:	2.552	-0.974	1.308	-1.181	0.686	-0.778	1.930	-0.057	-0.490	1.308	0.100	-0.210	1.308	-1.112	-0.904	-0.005	-0.974	0.104	-0.359	0.174	-0.187	-1.112	-0.193	-1.112	-0.213	0.393

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1oth_A_169	1oth	A	169	194	PIQILADYLTLQEHYSSLKGLTLSWI	HHHHHHHHHHHHHHHS--TT-EEEEE	aaaaaaaaaaaaaaavbapvxbxbxb
1pvv_A_135	1pvv	A	135	160	PCQALADYMTIWEKKGTIKGVKVVYV	HHHHHHHHHHHHHHHS--TT-EEEEE	aaaaaaaaaaaaaaavbapvxxbbxb
3csu_C_135	3csu	C	135	160	PTQTLLDLFTIQETQGRLDNLHVAMV	HHHHHHHHHHHHHHHS-SSS-EEEEE	aaaaaaaaaaaaaaavbablbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1oth_A_169	1oth	A	PAON-(PHOSPHONOACETYL)-L-ORNITHINE	Q - 171

Clusters included in this Subclass