ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.8.1

Subclass Accession number: 8721
Subclass: 8.8.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 64.1 +/- 12.0
Average RMSD (Å) : 0.400 +/- 0.000

Consensus geometry

d (Å): 17

delta (°): 135-180

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	SNCPGXPphpFh
(φψ)-conformation:	aappgpppppbb

Pattern:	[AFP]	[AG]	[D]	[FL]	[IV]	[AQ]	[F]	[A]	[GT]	[A]	[V]	[AG]	[LMV]	[S]	[N]	[C]	[P]	[G]	[AS]	[P]	[QR]	[LM]	[ENQ]	[F]	[FL]	[ALT]
Conservation:	-1.675	-0.507	0.995	-0.694	-0.181	-1.004	0.995	0.045	-0.887	0.045	0.045	-0.661	-0.736	0.045	0.995	2.421	1.470	0.995	-0.634	1.470	-0.426	-0.324	-0.779	0.995	-0.694	-1.315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1llp_*_105	1llp	-	105	130	PGDFIAFAGAVALSNCPGAPQMNFFT	HHHHHHHHHHHHHHTSTT------EE	aaaaaaaaaaaaaaaxpvxxxxxbbb
1lyc_A_113	1lyc	A	113	138	FGDLIQFATAVGMSNCPGSPRLEFLT	HHHHHHHHHHHHHHTSTT------EE	aaaaaaaaaaaaaaabpvxxxppbbb
1mn1_*_102	1mn1	-	102	127	AADLVQFAGAVALSNCPGAPRLEFLA	HHHHHHHHHHHHHTTSTT------EE	aaaaaaaaaaaaaaaxpvxxxxxbbb
1qpa_A_105	1qpa	A	105	130	PGDFIAFAGAVGVSNCPGAPQMQFFL	HHHHHHHHHHHHHHTSTT------EE	aaaaaaaaaaaaaaaxpgpxxxbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1mn1_*_102	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	A - 102

Clusters included in this Subclass