ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.1.1

Subclass Accession number: 8735
Subclass: 9.1.1

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 16

Average sequence ID (%) : 32.8 +/- 23.8
Average RMSD (Å) : 0.394 +/- 0.124

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	LhSXXXXhhpGXX
(φψ)-conformation:	aapaaaaabblbb

Pattern:	[AGSTV]	[AGKNR]	[aclmtv]	[AGIV]	[acilmv]	[AFLWY]	[L]	[ACLV]	[st]	[DNPS]	x	[ags]	[ADGPST]	[agwy]	[imtv]	[NSTV]	[AG]	[adegkqt]	[gitv]	[FHILVY]	x	[AIV]
Conservation:	-0.205	-0.435	-0.853	-0.033	-0.522	0.855	2.510	-0.124	0.594	0.304	-1.490	0.099	-0.406	-0.282	0.094	0.592	2.151	-1.096	-0.969	-0.109	-1.442	0.768

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ae1_A_238	1ae1	A	242	263	SALIAFLCFPAASYITGQIIWA	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaapaaaaabbvxbbxb
1cyd_A_212	1cyd	A	216	237	VNSILFLLSDRSASTSGGGILV	HHHHHHHHSGGGTT--SSEEEE	aaaaaaaaxaaaaabbgbbbxa
1d7o_A_266	1d7o	A	270	291	GNAAAFLVSPLASAITGATIYV	HHHHHHHTSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvxbbxb
1eny_*_236	1eny	-	239	260	AKTVCALLSDWLPATTGDIIYA	HHHHHHHHTTSSTT--SEEEEE	aaaaaaaaxaaaaabblbbbxb
1fmc_A_221	1fmc	A	225	246	ANAALFLCSPAASWVSGQILTV	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvbbbxb
1g0o_A_252	1g0o	A	256	277	ARVVCFLASNDGGWVTGKVIGI	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvbbbxb
1gee_A_221	1gee	A	225	246	AAVAAWLASSEASYVTGITLFA	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvxbxxb
1geg_A_224	1geg	A	228	249	AACVSYLASPDSDYMTGQSLLI	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvbbxxb
1h5q_A_234	1h5q	A	234	255	TGQAILLLSDHATYMTGGEYFI	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvxbbxb
1i01_A_212	1i01	A	216	237	ANAVAFLASDEAAYITGETLHV	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvbbxxb
1iy8_A_234	1iy8	A	238	259	AAVVAFLLSDDASYVNATVVPI	HHHHHHHTSGGGTT--S-EEEE	aaaaaaaabaaaaabbvxbbxb
1jw7_A_221	1jw7	A	225	246	GNAGMYLLSSLSSGVSGEVHFV	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvbbxxb
1k2w_A_224	1k2w	A	228	249	TGMAIFLATPEADYIVAQTYNV	HHHHHHTTSGGGTT--S-EEEE	aaaaaaaaxaaaaaxblbbxxb
1nff_A_209	1nff	A	213	234	SNLVVYLASDESSYSTGAEFVV	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaabbvbxbxb
1qsg_A_222	1qsg	A	226	247	GNSAAFLCSDLSAGISGEVVHV	HHHHHHHTSGGGTT--S-EEEE	aaaaaaaabaaaaabbvxbxxb
2ae2_A_225	2ae2	A	229	250	AAMVAFLCFPAASYVTGQIIYV	HHHHHHHHSGGGTT--S-EEEE	aaaaaaaaxaaaaaxbvxbbxb

Clusters included in this Subclass

CLUSTER: HE.10.0

CLUSTER: HE.11.1