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Information on SUBCLASS 1.1.4
Subclass Accession number: 8786
Subclass: 1.1.4 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 35

Average sequence ID (%) : 9.1 +/- 12.8
Average RMSD (Å) : 0.606 +/- 0.192

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xxxxx[cdhnqrsty]xxxxx
Conservation:-0.426-0.407-0.9560.695-0.3912.6400.536-0.690-0.484-0.237-0.281
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1azw_A_2111azw   A214224VTGHEDAHFALHHHHT-HHHHHaaaaaxaaaaa
1bxb_A_2951bxb   A317327EAFREDPEVKEHHHHT-HHHHHaaaaaxaaaaa
1c3c_A_101c3c   A1020MKDLWTEEAKYHHHHTSHHHHHaaaaaxaaaaa
1cpy_*_2711cpy   -276286DDYLNQDYVKEHHHHHSHHHHHaaaaapaaaaa
1di1_A_1931di1   A198208EYREKDVGKALHHHHT-HHHHHaaaaapaaaaa
1dv1_A_4181dv1   A422432IRIMNDENFQHHHHHH-HHHHHaaaaaxaaaaa
1dv1_B_4181dv1   B422432IRIMNDENFQHHHHHT-HHHHHaaaaaxaaaaa
1efy_A_6671efy   A673683IKMIFDVESMKHHHHT-HHHHHaaaaaxaaaaa
1f3l_A_2251f3l   A228238EEMLKDKVRTEHHHHT-HHHHHaaaaaxaaaaa
1fgj_A_2071fgj   A209219TANIETTVWATHHHHT-HHHHHaaaaaxaaaaa
1fp1_D_1341fp1   D136146TTFLCYPALLQHHHHT-HHHHHaaaaaxaaaaa
1g38_A_3681g38   A372382VQWLNSEAMQKHHHHTSHHHHHaaaaaxaaaaa
1glq_A_1871glq   A190200KAFLSSPEHVNHHHHTSHHHHHaaaaaxaaaaa
1gs0_A_2121gs0   A218228LKLICNVQTMEHHHHH-HHHHHaaaaapaaaaa
1h0h_A_8651h0h   A865875LMTRNTPWLLEHHHHTSHHHHHaaaaabaaaaa
1hlg_A_2331hlg   A233243NLLCSNALFIIHHHHT-HHHHHaaaaabaaaaa
1i1i_P_931i1i   P111121IEMSMREDVFQHHHHT-HHHHHaaaaaxaaaaa
1ivy_A_3071ivy   A310320STYLNNPYVRKHHHHTSHHHHHaaaaaxaaaaa
1jfz_A_641jfz   A7181KAYLISEEFFNHHHHTSHHHHHaaaaapaaaaa
1kiy_A_291kiy   A4454AHHFAQPRQQQHHHHTSHHHHHaaaaaxaaaaa
1llf_A_731llf   A7989DLVMQSKVFQAHHHHHSHHHHHaaaaaxaaaaa
1lox_*_4871lox   -488498EAVRDDLELQSHHHHT-HHHHHaaaaaxaaaaa
1lpp_*_731lpp   -7989DLVMQSKVFEAHHHHTSHHHHHaaaaaxaaaaa
1mq4_A_3741mq4   A375385REVLEHPWITAHHHHT-HHHHHaaaaaxaaaaa
1nek_B_1541nek   B154164CCSTSCPSFWWHHHHT-HHHHHaaaaabaaaaa
1now_A_3591now   A359369KCWESNPKIQDHHHHT-HHHHHaaaaaxaaaaa
1nyr_A_2251nyr   A237247ERKERDHRKIGHHHHT-HHHHHaaaaapaaaaa
1o0w_A_781o0w   A8595KSAAASEEVLAHHHHTSHHHHHaaaaaxaaaaa
1p80_A_6731p80   A673683ADIADNGDANYHHHHT-HHHHHaaaaaxaaaaa
1q5n_A_121q5n   A1424VTEIFSDRALVHHHHTSHHHHHaaaaaxaaaaa
1qdl_A_2501qdl   A258268LELMNSEKDKAHHHHT-HHHHHaaaaaxaaaaa
1qla_B_1561qla   B156166CCIAACGTKIMHHHHT-HHHHHaaaaaxaaaaa
2dnj_A_132dnj   A1323ETKMSNATLASHHHHT-HHHHHaaaaaxaaaaa
3thi_A_2833thi   A290300ANVMASADTVEHHHHHSHHHHHaaaaaxaaaaa
4lip_D_1604lip   D163173ALKTLTTAQAAHHHHTSHHHHHaaaaaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f3l_A_2251f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 227
1f3l_A_2251f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE M - 230
1f3l_A_2251f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 231
1f3l_A_2251f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE R - 236
1fgj_A_2071fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 207
1fgj_A_2071fgj   A     HECHEME C D - 207
1fgj_A_2071fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 210
1fgj_A_2071fgj   A     HECHEME C A - 210
1fgj_A_2071fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 211
1fgj_A_2071fgj   A     HECHEME C N - 211
1fgj_A_2071fgj   A     HECHEME C I - 212
1fgj_A_2071fgj   A     HECHEME C T - 214
1fgj_A_2071fgj   A     HECHEME C V - 216
1fgj_A_2071fgj   A     HECHEME C W - 217
1fp1_D_1341fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE F - 135
1fp1_D_1341fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE F - 138
1h0h_A_8651h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER L - 865
1h0h_A_8651h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER M - 866
1ivy_A_3071ivy   A     NAGN-ACETYL-D-GLUCOSAMINE T - 307
1ivy_A_3071ivy   A     NAGN-ACETYL-D-GLUCOSAMINE A - 308
1kiy_A_291kiy   A     EDO1,2-ETHANEDIOL L - 55
1nek_B_1541nek   B     FS4IRON/SULFUR CLUSTER C - 154
1nek_B_1541nek   B     FS4IRON/SULFUR CLUSTER C - 155
1nek_B_1541nek   B     F3SFE3-S4 CLUSTER C - 155
1nek_B_1541nek   B     FS4IRON/SULFUR CLUSTER S - 156
1nek_B_1541nek   B     F3SFE3-S4 CLUSTER S - 158
1nek_B_1541nek   B     F3SFE3-S4 CLUSTER C - 159
1nek_B_1541nek   B     F3SFE3-S4 CLUSTER P - 160
1nek_B_1541nek   B     UQ2UBIQUINONE-2 P - 160
1nek_B_1541nek   B     F3SFE3-S4 CLUSTER S - 161
1nek_B_1541nek   B     UQ2UBIQUINONE-2 S - 161
1nek_B_1541nek   B     F3SFE3-S4 CLUSTER F - 162
1nek_B_1541nek   B     UQ2UBIQUINONE-2 W - 163
1nek_B_1541nek   B     UQ2UBIQUINONE-2 W - 164
1qla_B_1561qla   B     FS4IRON/SULFUR CLUSTER C - 156
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER C - 157
1qla_B_1561qla   B     FS4IRON/SULFUR CLUSTER C - 157
1qla_B_1561qla   B     FS4IRON/SULFUR CLUSTER I - 158
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER A - 160
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER C - 161
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER G - 162
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER T - 163
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER K - 164
2dnj_A_132dnj   A     NAGN-ACETYL-D-GLUCOSAMINE N - 18
2dnj_A_132dnj   A     NAGN-ACETYL-D-GLUCOSAMINE A - 19
2dnj_A_132dnj   A     NAGN-ACETYL-D-GLUCOSAMINE T - 20
2dnj_A_132dnj   A     NAGN-ACETYL-D-GLUCOSAMINE L - 21
4lip_D_1604lip   D     CCPBUTYLPHOSPHONATE L - 167
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1qla_B_1561qla   B FS1FE4S4 IRON SULPHUR CENTRE LIGANDS FOR CHAIN BC - 157
1qla_B_1561qla   B FS5FE3S4 IRON SULPHUR CENTRE LIGANDS FOR CHAIN BC - 161

Clusters included in this Subclass
CLUSTER: HH.1.6
CLUSTER: HH.2.10
CLUSTER: HH.3.62