ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.1.39

Subclass Accession number: 8821
Subclass: 1.1.39

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 2

Average sequence ID (%) : 11.1 +/- 0.0
Average RMSD (Å) : 0.500 +/- 0.000

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	ppcXp
(φψ)-conformation:	aapaa

Pattern:	[GP]	[AR]	[A]	[KN]	[AI]	[AF]	[KL]	[KL]	[AL]	[A]	x	[IT]	[L]	[AI]	[ET]	[HR]	[DN]	[AK]	[DE]	[AL]	[HR]	[QR]	[RY]	[FL]	[EN]	x	[AW]	[QR]	[K]	[AL]	[EQ]	[ET]	x	[EG]	[IV]	[KL]
Conservation:	-0.097	-0.564	1.536	0.369	-0.797	-0.797	-1.031	-1.031	-0.797	1.536	-1.031	-0.564	1.536	-0.797	-0.331	0.836	1.070	-0.564	1.303	-0.797	0.836	0.603	-0.331	0.136	0.369	-1.264	-0.097	0.603	2.470	-0.797	1.070	-0.331	-1.731	-0.564	1.070	-1.031

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1o7x_A_266	1o7x	A	266	301	PRAKIFKKLALTLIERNADARRYFEIAQKLEELGIK	HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaaaaaxaaaaaaaaaaaaaaaaaaa
1qcz_A_123	1qcz	A	125	160	GAANAALLAAQILATHDKELHQRLNDWRKAQTDEVL	HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaaaaabaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass