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Information on SUBCLASS 1.2.5
Subclass Accession number: 8827
Subclass: 1.2.5 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 12.1 +/- 17.7
Average RMSD (Å) : 0.623 +/- 0.217

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XpXXX
(φψ)-conformation: aabaa
Pattern: [clty]x[adkrt][CDHQSTY]x[dekpqs][aegnrt][AFIKLTV]x[dehknqry]
Conservation:-0.9260.9470.4720.8460.7110.709-1.6160.341-1.5990.114
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8r_A_2021a8r   A202211LFKSSQNTRHHHHH-HHHHHaaaaxaaaaa
1d3c_A_3971d3c   A397406LRKCNPAIAYHHHH-HHHHHaaaabaaaaa
1dmt_A_4841dmt   A484493DIVSNDNKLNHHHH-HHHHHaaaabaaaaa
1fi4_A_2141fi4   A215224TVATSELFKEHHHH-SHHHHaaaaxaaaaa
1gtz_A_831gtz   A8392YSHTSVAILDHHHH-HHHHHaaaabaaaaa
1hyo_A_951hyo   A95104RLRDDKELRQHHHH-HHHHHaaaaxaaaaa
1nr6_A_2201nr6   A222231LLDYFPGIHKHHHHSHHHHHaaaabwaaaa
1og5_A_2221og5   A222231LLDYFPGTHNHHHH--HHHHaaaabaaxga
1omw_A_621omw   A7281CLKHLEEAKPHHHH-TTTHHaaaabaaaaa
1pam_A_3971pam   A397406LRKSNPAIAYHHHH-HHHHHaaaabaaaaa
2baa_*_1422baa   -142151LVATDATVGFHHHH-HHHHHaaaabaaaaa
2hgs_A_932hgs   A93102TIKQDDFTARHHHH-HHHHHaaaabaaaaa
3gcb_*_1683gcb   -168177YSTTASRKWNHHHHB-HHHHaaaabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fi4_A_2141fi4   A     MSESELENOMETHIONINE L - 214
1fi4_A_2141fi4   A     MSESELENOMETHIONINE T - 215
1fi4_A_2141fi4   A     MSESELENOMETHIONINE V - 216
1fi4_A_2141fi4   A     MSESELENOMETHIONINE A - 217
1fi4_A_2141fi4   A     MSESELENOMETHIONINE F - 222
1fi4_A_2141fi4   A     MSESELENOMETHIONINE I - 226
1gtz_A_831gtz   A     DHK3-DEHYDROSHIKIMATE Y - 83
1gtz_A_831gtz   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Y - 83
1gtz_A_831gtz   A     DHK3-DEHYDROSHIKIMATE S - 84
1gtz_A_831gtz   A     DHK3-DEHYDROSHIKIMATE H - 85
1gtz_A_831gtz   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL T - 86
1gtz_A_831gtz   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL S - 87
1gtz_A_831gtz   A     DHK3-DEHYDROSHIKIMATE V - 88
1gtz_A_831gtz   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 88
1gtz_A_831gtz   A     DHK3-DEHYDROSHIKIMATE D - 92
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gtz_A_831gtz   A DHADHK BINDING SITE FOR CHAIN AH - 85
1gtz_A_831gtz   A TRATRS BINDING SITE FOR CHAIN AT - 86
1gtz_A_831gtz   A TRATRS BINDING SITE FOR CHAIN AS - 87

Clusters included in this Subclass
CLUSTER: HH.1.49
CLUSTER: HH.2.53
CLUSTER: HH.2.94
CLUSTER: HH.3.174