Logo
Information on SUBCLASS 1.2.8
Subclass Accession number: 8830
Subclass: 1.2.8 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 15.5 +/- 18.2
Average RMSD (Å) : 0.582 +/- 0.133

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 45-90 rho (°): 270-315
Consensus Sequence: XpcXp
(φψ)-conformation: aabaa
Pattern: [akqrs][AFILV][afmtv]x[ADEKQRS][DKN]x[dens]xx[dnqrt][CHKNQR]
Conservation:-0.0191.200-0.556-0.8410.2151.851-0.1021.070-0.936-1.445-0.8740.436
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4e_A_2441a4e   A249260KIAGSNPDYCQQHHHHH-TTHHHHaaaaabaaaaaa
1dgf_A_2471dgf   A252263RLSQEDPDYGIRHHHHH-TTHHHHaaaaabaaaaaa
1e93_A_2261e93   A231242ALVGKDRESSQRHHHHH-TTHHHHaaaaabaaaaaa
1ez0_A_2641ez0   A265276SAMRAKADLADQHHHHH-TTHHHHaaaaabaaaaaa
1gte_A_1091gte   A115126MIFSDNPLGLTCHHHHH-TTHHHHaaaaabaaaaaa
1gwe_A_2321gwe   A237248KIAGENADFHRQHHHHH-TTHHHHaaaaabaaaaaa
1iat_A_251iat   A2738RLFDANKDRFNHHHHHH-TTHHHHaaaaabaaaaaa
1k8t_A_7431k8t   A763774LLTHQKSNIEFKHHHHH-TTHHHHaaaaabaaaaaa
1m7s_A_2491m7s   A254265QVQSKDYSHLTNHHHHH-S-HHHHaaaaabaaaaaa
1oya_*_3481oya   -348359RFFISNPDLVDRHHHHH-TTHHHHaaaaabaaaaaa
1p80_A_3041p80   A309320KLTGRDPDFHRRHHHHH-TTHHHHaaaaabaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gte_A_1091gte   A     FS4IRON/SULFUR CLUSTER N - 120
1gte_A_1091gte   A     FS4IRON/SULFUR CLUSTER G - 123
1gte_A_1091gte   A     FS4IRON/SULFUR CLUSTER C - 126
1gte_A_1091gte   A     FS4IRON/SULFUR CLUSTER G - 127
1gte_A_1091gte   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 129
1iat_A_251iat   A     SULSULFATE ANION R - 27
1oya_*_3481oya   *     FMNFLAVIN MONONUCLEOTIDE R - 348
1oya_*_3481oya   *     FMNFLAVIN MONONUCLEOTIDE F - 349
1oya_*_3481oya   *     FMNFLAVIN MONONUCLEOTIDE I - 351
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gte_A_1091gte   A FA1FS4 BINDING SITE FOR CHAIN AN - 120

Clusters included in this Subclass
CLUSTER: HH.3.26