Logo
Information on SUBCLASS 1.3.1
Subclass Accession number: 8856
Subclass: 1.3.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 72

Average sequence ID (%) : 11.6 +/- 14.4
Average RMSD (Å) : 0.538 +/- 0.189

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXXhX
(φψ)-conformation: aalaa
Pattern: xxxxx[adegknqr][afgilmvwy]x[adegknqrst]x
Conservation:-0.453-0.408-0.4440.239-0.2312.312-0.215-1.2281.030-0.602
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0c_A_3491a0c   A371380KLVKDRVFDKHHHHTTHHHHaaaaalaaaa
1a0d_A_3471a0d   A369378RLIEDRVFDEHHHHTTHHHHaaaaalaaaa
1a0e_A_3481a0e   A371380KLVKDGVLDKHHHHHTHHHHaaaaalaaaa
1ati_A_731ati   A7382VLHYSGHEATHHHHTSHHHHaaaaagaaaa
1bgv_A_401bgv   A4150EYEEVALLERHHHHTTHHHHaaaaalaaaa
1bh6_A_71bh6   A716GIPLIKADKVHHHHTTHHHHaaaaavaaaa
1bob_*_2591bob   -272281RLRKLGYDAVHHHHTTHHHHaaaaavaaaa
1c30_A_921c30   A101110ELERQGVLEEHHHHTTHHHHaaaaavaaaa
1c96_A_3941c96   A399408TIERDGYAQVHHHHTTHHHHaaaaavaaaa
1cgt_*_541cgt   -5968NKINDNYFSDHHHHTTHHHHaaaaavaaaa
1ciu_*_541ciu   -5968NKINDGYLTGHHHHTTHHHHaaaaavaaaa
1d3v_A_271d3v   A3039ALRKAGLVEKHHHHTTHHHHaaaaavaaaa
1d3y_A_1991d3y   A204213RLNAERFWDKHHHHTTHHHHaaaaalaaaa
1d7u_A_3081d7u   A320329VVQRDGLVARHHHHTTHHHHaaaaalaaaa
1dmh_A_711dmh   A7483LSPGLGFDHYHHHHTTHHHHaaaaavaaaa
1dxy_*_1021dxy   -114123LYLLRNMGKVHHHHTTHHHHaaaaalaaaa
1e9y_B_4961e9y   B497506AAYDKGIKEEHHHHTTHHHHaaaaavaaaa
1ebf_A_2121ebf   A212221RDDLNGLDVAHHHHT-HHHHaaaaavaaaa
1ej2_A_1511ej2   A156165VIDEINGVERHHHHTTHHHHaaaaalaaaa
1ejx_C_14941ejx   C14951504AAAANGVAERHHHHTTHHHHaaaaavaaaa
1f0j_A_1911f0j   A199208IFQERDLLKTHHHHTTHHHHaaaaalaaaa
1f8m_A_3931f8m   A393402HQREVGAGYFHHHHTTHHHHaaaaagaaaa
1f9a_A_1451f9a   A150159VIKEIKGVERHHHHHTHHHHaaaaalaaaa
1ffv_B_4401ffv   B447456VLDAVDYPALHHHHHTHHHHaaaaalaaaa
1fm2_A_741fm2   A7988WLLTNGVPERHHHHTTHHHHaaaaalaaaa
1fp1_D_361fp1   D4352AAIDLNLFEIHHHHTTHHHHaaaaalaaaa
1fp2_A_271fp2   A3544WAVEMNIPNIHHHHTTHHHHaaaaavaaaa
1gci_*_61gci   -716GISRVQAPAAHHHHTTHHHHaaaaavaaaa
1gdh_A_1021gdh   A114123LGSARRAGEGHHHHTTHHHHaaaaalaaaa
1gpw_B_551gpw   B6069RLRENDLIDFHHHHTT-HHHaaaaalaaaa
1gso_A_731gso   A7483APLVKGVVDTHHHHTTHHHHaaaaavaaaa
1hd7_A_721hd7   A7483AWIKKKGLDWHHHHTTHHHHaaaaavaaaa
1iat_A_611iat   A7079LAKSRGVEAAHHHHTTHHHHaaaaavaaaa
1icr_A_1691icr   A172181LDAEFGLKEKHHHHHTHHHHaaaaalaaaa
1igw_B_3991igw   B399408HQQEVGTGYFHHHHTTHHHHaaaaavaaaa
1j4a_A_1041j4a   A116125ARILRQDKAMHHHHHTHHHHaaaaavaaaa
1jv1_A_2261jv1   A229238ALAAQNIVEDHHHHTTHHHHaaaaalaaaa
1k7c_A_451k7c   A4756SYTREGRFENHHHHTTHHHHaaaaavaaaa
1kiy_A_1771kiy   A182191RRMNGLGHCVHHHHH-HHHHaaaaavaaaa
1kqb_A_1691kqb   A172181LDEEFGLKEKHHHHTTHHHHaaaaalaaaa
1kyz_A_311kyz   A3847SALELDLLEIHHHHTTHHHHaaaaalaaaa
1l5j_A_7421l5j   A747756QLTEEGYYSVHHHHTTHHHHaaaaavaaaa
1lw3_A_3791lw3   A382391NLESTHWLEHHHHHH-HHHHaaaaavaaaa
1lw6_E_61lw6   E716GVSQIKAPALHHHHTTHHHHaaaaavaaaa
1m6y_A_2051m6y   A212221RIYVNRELENHHHHHTHHHHaaaaalaaaa
1msk_*_11481msk   -11511160IWELLEVEKHHHHHTTHHHHaaaaalaaaa
1mx3_A_1251mx3   A137146LNLYRRATWLHHHHH-HHHHaaaaalaaaa
1n62_B_4431n62   B450459AMDTVGYHQLHHHHHTHHHHaaaaavaaaa
1np3_A_1601np3   A167176YACGVGGGRTHHHHTTHHHHaaaaagaaaa
1np3_A_2681np3   A279288KRIQDGEYAKHHHHTTHHHHaaaaavaaaa
1nyr_A_3021nyr   A303312LYKTSGHWDHHHHHHTHHHHaaaaagaaaa
1o0w_A_911o0w   A97106VSRKMNLGKFHHHHTTHHHHaaaaalaaaa
1odz_A_3851odz   A386395ENINNGTLEDHHHHTSHHHHaaaaavaaaa
1ohv_A_3581ohv   A370379IIKREDLLSNHHHHTTHHHHaaaaalaaaa
1pix_A_4211pix   A422431DAEKAELLGLHHHHTTHHHHaaaaavaaaa
1pjr_*_4801pjr   -487496VLDKSGYREMHHHHTSHHHHaaaaavaaaa
1psd_A_1091psd   A121130LLLLRGVPEAHHHHTTHHHHaaaaavaaaa
1pwh_A_2681pwh   A275284AAVYSGVVCRHHHHT-HHHHaaaaavaaaa
1pym_A_2721pym   A275284IFRLQRDDELHHHHTTHHHHaaaaalaaaa
1q7e_A_1421q7e   A145154AQAAGGAASTHHHHTTHHHHaaaaagaaaa
1req_A_4331req   A435444KAIEKGIPKMHHHHHTHHHHaaaaavaaaa
1ril_*_721ril   -7685KAFTEGWLEGHHHHSSHHHHaaaaavaaaa
1thm_*_141thm   -1423GPQKIQAPQAHHHHTTHHHHaaaaalaaaa
1uby_*_3091uby   -318327LYEAVGMRAAHHHHHTHHHHaaaaavaaaa
2bce_*_4392bce   -439448LQYVFGKPFAHHHHTTHHHHaaaaalaaaa
2cev_A_232cev   A2635AMRYAGVIERHHHHTTHHHHaaaaavaaaa
2hvm_*_2572hvm   -259268YDDKNGYSSSHHHHHTHHHHaaaaavaaaa
2nac_A_1472nac   A159168LSLVRNYLPSHHHHTTHHHHaaaaalaaaa
2oat_A_3272oat   A339348VLEEENLAENHHHHTTHHHHaaaaalaaaa
2tpt_*_2932tpt   -302311AVLDNGKAAEHHHHTSHHHHaaaaavaaaa
3pmg_A_5313pmg   A542551ALKVSQLQERHHHHHTHHHHaaaaalaaaa
4ubp_C_4974ubp   C498507SSIQQGVPAKHHHHTTHHHHaaaaavaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bob_*_2591bob   *     ACOACETYL COENZYME *A A - 260
1bob_*_2591bob   *     ACOACETYL COENZYME *A F - 261
1bob_*_2591bob   *     ACOACETYL COENZYME *A D - 263
1bob_*_2591bob   *     ACOACETYL COENZYME *A L - 264
1bob_*_2591bob   *     ACOACETYL COENZYME *A R - 267
1bob_*_2591bob   *     ACOACETYL COENZYME *A N - 268
1c30_A_921c30   A     MNMANGANESE (II) ION Q - 93
1c30_A_921c30   A     PIHYDROGENPHOSPHATE ION Q - 93
1c30_A_921c30   A     NETTETRAETHYLAMMONIUM ION Q - 93
1c30_A_921c30   A     NETTETRAETHYLAMMONIUM ION T - 94
1c30_A_921c30   A     NETTETRAETHYLAMMONIUM ION A - 95
1c30_A_921c30   A     NETTETRAETHYLAMMONIUM ION N - 97
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 71
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL G - 72
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 72
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL L - 73
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 74
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE S - 75
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL P - 76
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL G - 77
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 78
1dmh_A_711dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE F - 80
1dmh_A_711dmh   A     MCT4-METHYLCATECHOL D - 81
1dxy_*_1021dxy   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 105
1ebf_A_2121ebf   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 223
1f0j_A_1911f0j   A     ARSARSENIC T - 193
1f0j_A_1911f0j   A     ARSARSENIC C - 194
1f0j_A_1911f0j   A     ARSARSENIC I - 195
1f0j_A_1911f0j   A     ARSARSENIC Y - 197
1f0j_A_1911f0j   A     ARSARSENIC A - 198
1f8m_A_3931f8m   A     PYRPYRUVIC ACID H - 393
1f8m_A_3931f8m   A     PYRPYRUVIC ACID Q - 394
1fm2_A_741fm2   A     MSESELENOMETHIONINE W - 92
1igw_B_3991igw   B     HGMERCURY (II) ION T - 412
1igw_B_3991igw   B     HGMERCURY (II) ION T - 413
1j4a_A_1041j4a   A     SULSULFATE ANION P - 104
1kiy_A_1771kiy   A     EDO1,2-ETHANEDIOL G - 186
1kiy_A_1771kiy   A     EDO1,2-ETHANEDIOL L - 187
1kiy_A_1771kiy   A     EDO1,2-ETHANEDIOL V - 191
1m6y_A_2051m6y   A     MSESELENOMETHIONINE F - 208
1m6y_A_2051m6y   A     MSESELENOMETHIONINE Q - 209
1m6y_A_2051m6y   A     MSESELENOMETHIONINE I - 211
1m6y_A_2051m6y   A     MSESELENOMETHIONINE R - 212
1m6y_A_2051m6y   A     MSESELENOMETHIONINE V - 215
1m6y_A_2051m6y   A     MSESELENOMETHIONINE N - 216
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 216
1m6y_A_2051m6y   A     MSESELENOMETHIONINE E - 218
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 218
1m6y_A_2051m6y   A     MSESELENOMETHIONINE N - 221
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 221
1m6y_A_2051m6y   A     MSESELENOMETHIONINE L - 222
1m6y_A_2051m6y   A     MSESELENOMETHIONINE F - 225
1m6y_A_2051m6y   A     MSESELENOMETHIONINE L - 226
1mx3_A_1251mx3   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 125
1mx3_A_1251mx3   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 128
1nyr_A_3021nyr   A     THRTHREONINE H - 309
1psd_A_1091psd   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 109
1psd_A_1091psd   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 112
1pwh_A_2681pwh   A     PLVN-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN -4-YL}METHYL)-O-METHYL-L-SERINE A - 269
1pwh_A_2681pwh   A     PLVN-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN -4-YL}METHYL)-O-METHYL-L-SERINE C - 270
1q7e_A_1421q7e   A     MSESELENOMETHIONINE E - 142
1q7e_A_1421q7e   A     MSESELENOMETHIONINE N - 143
1q7e_A_1421q7e   A     MSESELENOMETHIONINE A - 145
1req_A_4331req   A     B12COBALAMIN K - 443
1req_A_4331req   A     B12COBALAMIN Q - 454
1req_A_4331req   A     B12COBALAMIN D - 458
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ati_A_731ati   A SA1THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE.H - 79

Clusters included in this Subclass
CLUSTER: HH.0.13
CLUSTER: HH.1.10
CLUSTER: HH.1.7
CLUSTER: HH.1.75
CLUSTER: HH.1.76
CLUSTER: HH.2.150
CLUSTER: HH.2.182
CLUSTER: HH.2.192
CLUSTER: HH.2.29
CLUSTER: HH.2.7
CLUSTER: HH.3.22
CLUSTER: HH.3.6