Information on SUBCLASS 1.3.1 |
Subclass Accession number: 8856
Subclass: 1.3.1 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 72 Average sequence ID (%) : 11.6 +/- 14.4 Average RMSD (Å) : 0.538 +/- 0.189 Consensus geometry
|
Consensus Sequence: | XXXhX |
(φψ)-conformation: | aalaa |
Pattern: | x | x | x | x | x | [adegknqr] | [afgilmvwy] | x | [adegknqrst] | x |
Conservation: | -0.453 | -0.408 | -0.444 | 0.239 | -0.231 | 2.312 | -0.215 | -1.228 | 1.030 | -0.602 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a0c_A_349 | 1a0c | A | 371 | 380 | KLVKDRVFDK | HHHHTTHHHH | aaaaalaaaa |
1a0d_A_347 | 1a0d | A | 369 | 378 | RLIEDRVFDE | HHHHTTHHHH | aaaaalaaaa |
1a0e_A_348 | 1a0e | A | 371 | 380 | KLVKDGVLDK | HHHHHTHHHH | aaaaalaaaa |
1ati_A_73 | 1ati | A | 73 | 82 | VLHYSGHEAT | HHHHTSHHHH | aaaaagaaaa |
1bgv_A_40 | 1bgv | A | 41 | 50 | EYEEVALLER | HHHHTTHHHH | aaaaalaaaa |
1bh6_A_7 | 1bh6 | A | 7 | 16 | GIPLIKADKV | HHHHTTHHHH | aaaaavaaaa |
1bob_*_259 | 1bob | - | 272 | 281 | RLRKLGYDAV | HHHHTTHHHH | aaaaavaaaa |
1c30_A_92 | 1c30 | A | 101 | 110 | ELERQGVLEE | HHHHTTHHHH | aaaaavaaaa |
1c96_A_394 | 1c96 | A | 399 | 408 | TIERDGYAQV | HHHHTTHHHH | aaaaavaaaa |
1cgt_*_54 | 1cgt | - | 59 | 68 | NKINDNYFSD | HHHHTTHHHH | aaaaavaaaa |
1ciu_*_54 | 1ciu | - | 59 | 68 | NKINDGYLTG | HHHHTTHHHH | aaaaavaaaa |
1d3v_A_27 | 1d3v | A | 30 | 39 | ALRKAGLVEK | HHHHTTHHHH | aaaaavaaaa |
1d3y_A_199 | 1d3y | A | 204 | 213 | RLNAERFWDK | HHHHTTHHHH | aaaaalaaaa |
1d7u_A_308 | 1d7u | A | 320 | 329 | VVQRDGLVAR | HHHHTTHHHH | aaaaalaaaa |
1dmh_A_71 | 1dmh | A | 74 | 83 | LSPGLGFDHY | HHHHTTHHHH | aaaaavaaaa |
1dxy_*_102 | 1dxy | - | 114 | 123 | LYLLRNMGKV | HHHHTTHHHH | aaaaalaaaa |
1e9y_B_496 | 1e9y | B | 497 | 506 | AAYDKGIKEE | HHHHTTHHHH | aaaaavaaaa |
1ebf_A_212 | 1ebf | A | 212 | 221 | RDDLNGLDVA | HHHHT-HHHH | aaaaavaaaa |
1ej2_A_151 | 1ej2 | A | 156 | 165 | VIDEINGVER | HHHHTTHHHH | aaaaalaaaa |
1ejx_C_1494 | 1ejx | C | 1495 | 1504 | AAAANGVAER | HHHHTTHHHH | aaaaavaaaa |
1f0j_A_191 | 1f0j | A | 199 | 208 | IFQERDLLKT | HHHHTTHHHH | aaaaalaaaa |
1f8m_A_393 | 1f8m | A | 393 | 402 | HQREVGAGYF | HHHHTTHHHH | aaaaagaaaa |
1f9a_A_145 | 1f9a | A | 150 | 159 | VIKEIKGVER | HHHHHTHHHH | aaaaalaaaa |
1ffv_B_440 | 1ffv | B | 447 | 456 | VLDAVDYPAL | HHHHHTHHHH | aaaaalaaaa |
1fm2_A_74 | 1fm2 | A | 79 | 88 | WLLTNGVPER | HHHHTTHHHH | aaaaalaaaa |
1fp1_D_36 | 1fp1 | D | 43 | 52 | AAIDLNLFEI | HHHHTTHHHH | aaaaalaaaa |
1fp2_A_27 | 1fp2 | A | 35 | 44 | WAVEMNIPNI | HHHHTTHHHH | aaaaavaaaa |
1gci_*_6 | 1gci | - | 7 | 16 | GISRVQAPAA | HHHHTTHHHH | aaaaavaaaa |
1gdh_A_102 | 1gdh | A | 114 | 123 | LGSARRAGEG | HHHHTTHHHH | aaaaalaaaa |
1gpw_B_55 | 1gpw | B | 60 | 69 | RLRENDLIDF | HHHHTT-HHH | aaaaalaaaa |
1gso_A_73 | 1gso | A | 74 | 83 | APLVKGVVDT | HHHHTTHHHH | aaaaavaaaa |
1hd7_A_72 | 1hd7 | A | 74 | 83 | AWIKKKGLDW | HHHHTTHHHH | aaaaavaaaa |
1iat_A_61 | 1iat | A | 70 | 79 | LAKSRGVEAA | HHHHTTHHHH | aaaaavaaaa |
1icr_A_169 | 1icr | A | 172 | 181 | LDAEFGLKEK | HHHHHTHHHH | aaaaalaaaa |
1igw_B_399 | 1igw | B | 399 | 408 | HQQEVGTGYF | HHHHTTHHHH | aaaaavaaaa |
1j4a_A_104 | 1j4a | A | 116 | 125 | ARILRQDKAM | HHHHHTHHHH | aaaaavaaaa |
1jv1_A_226 | 1jv1 | A | 229 | 238 | ALAAQNIVED | HHHHTTHHHH | aaaaalaaaa |
1k7c_A_45 | 1k7c | A | 47 | 56 | SYTREGRFEN | HHHHTTHHHH | aaaaavaaaa |
1kiy_A_177 | 1kiy | A | 182 | 191 | RRMNGLGHCV | HHHHH-HHHH | aaaaavaaaa |
1kqb_A_169 | 1kqb | A | 172 | 181 | LDEEFGLKEK | HHHHTTHHHH | aaaaalaaaa |
1kyz_A_31 | 1kyz | A | 38 | 47 | SALELDLLEI | HHHHTTHHHH | aaaaalaaaa |
1l5j_A_742 | 1l5j | A | 747 | 756 | QLTEEGYYSV | HHHHTTHHHH | aaaaavaaaa |
1lw3_A_379 | 1lw3 | A | 382 | 391 | NLESTHWLEH | HHHHH-HHHH | aaaaavaaaa |
1lw6_E_6 | 1lw6 | E | 7 | 16 | GVSQIKAPAL | HHHHTTHHHH | aaaaavaaaa |
1m6y_A_205 | 1m6y | A | 212 | 221 | RIYVNRELEN | HHHHHTHHHH | aaaaalaaaa |
1msk_*_1148 | 1msk | - | 1151 | 1160 | IWELLEVEKH | HHHHTTHHHH | aaaaalaaaa |
1mx3_A_125 | 1mx3 | A | 137 | 146 | LNLYRRATWL | HHHHH-HHHH | aaaaalaaaa |
1n62_B_443 | 1n62 | B | 450 | 459 | AMDTVGYHQL | HHHHHTHHHH | aaaaavaaaa |
1np3_A_160 | 1np3 | A | 167 | 176 | YACGVGGGRT | HHHHTTHHHH | aaaaagaaaa |
1np3_A_268 | 1np3 | A | 279 | 288 | KRIQDGEYAK | HHHHTTHHHH | aaaaavaaaa |
1nyr_A_302 | 1nyr | A | 303 | 312 | LYKTSGHWDH | HHHHHTHHHH | aaaaagaaaa |
1o0w_A_91 | 1o0w | A | 97 | 106 | VSRKMNLGKF | HHHHTTHHHH | aaaaalaaaa |
1odz_A_385 | 1odz | A | 386 | 395 | ENINNGTLED | HHHHTSHHHH | aaaaavaaaa |
1ohv_A_358 | 1ohv | A | 370 | 379 | IIKREDLLSN | HHHHTTHHHH | aaaaalaaaa |
1pix_A_421 | 1pix | A | 422 | 431 | DAEKAELLGL | HHHHTTHHHH | aaaaavaaaa |
1pjr_*_480 | 1pjr | - | 487 | 496 | VLDKSGYREM | HHHHTSHHHH | aaaaavaaaa |
1psd_A_109 | 1psd | A | 121 | 130 | LLLLRGVPEA | HHHHTTHHHH | aaaaavaaaa |
1pwh_A_268 | 1pwh | A | 275 | 284 | AAVYSGVVCR | HHHHT-HHHH | aaaaavaaaa |
1pym_A_272 | 1pym | A | 275 | 284 | IFRLQRDDEL | HHHHTTHHHH | aaaaalaaaa |
1q7e_A_142 | 1q7e | A | 145 | 154 | AQAAGGAAST | HHHHTTHHHH | aaaaagaaaa |
1req_A_433 | 1req | A | 435 | 444 | KAIEKGIPKM | HHHHHTHHHH | aaaaavaaaa |
1ril_*_72 | 1ril | - | 76 | 85 | KAFTEGWLEG | HHHHSSHHHH | aaaaavaaaa |
1thm_*_14 | 1thm | - | 14 | 23 | GPQKIQAPQA | HHHHTTHHHH | aaaaalaaaa |
1uby_*_309 | 1uby | - | 318 | 327 | LYEAVGMRAA | HHHHHTHHHH | aaaaavaaaa |
2bce_*_439 | 2bce | - | 439 | 448 | LQYVFGKPFA | HHHHTTHHHH | aaaaalaaaa |
2cev_A_23 | 2cev | A | 26 | 35 | AMRYAGVIER | HHHHTTHHHH | aaaaavaaaa |
2hvm_*_257 | 2hvm | - | 259 | 268 | YDDKNGYSSS | HHHHHTHHHH | aaaaavaaaa |
2nac_A_147 | 2nac | A | 159 | 168 | LSLVRNYLPS | HHHHTTHHHH | aaaaalaaaa |
2oat_A_327 | 2oat | A | 339 | 348 | VLEEENLAEN | HHHHTTHHHH | aaaaalaaaa |
2tpt_*_293 | 2tpt | - | 302 | 311 | AVLDNGKAAE | HHHHTSHHHH | aaaaavaaaa |
3pmg_A_531 | 3pmg | A | 542 | 551 | ALKVSQLQER | HHHHHTHHHH | aaaaalaaaa |
4ubp_C_497 | 4ubp | C | 498 | 507 | SSIQQGVPAK | HHHHTTHHHH | aaaaavaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ati_A_73 | 1ati | A | SA1THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE. | H - 79 |
Clusters included in this Subclass |