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Information on SUBCLASS 1.4.2
Subclass Accession number: 8870
Subclass: 1.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 15.9 +/- 14.7
Average RMSD (Å) : 0.633 +/- 0.250

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XhGpX
(φψ)-conformation: aaeaa
Pattern: [dens][afi][afily][aekm][agklt][ILV][G][dknq][ADEN][aktv][AILVW][dknr][EKNRS]
Conservation:-0.335-0.504-0.470-0.301-0.8610.9792.998-0.373-0.064-0.364-0.420-0.4080.123
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1exn_A_2621exn   A268280DAIAAVGQDVLDKHHHHTT-HHHHHHaaaaaaeaaaaaa
1hyo_A_681hyo   A6880NNFMGLGQAAWKEHHHHHH-HHHHHHaaaaaaeaaaaaa
1j09_A_4471j09   A449461EILALLGKERALRHHHHHT-HHHHHHaaaaaaeaaaaaa
1k38_A_1171k38   A122134LFAKEIGDDKARRHHHHHH-HHHHHHaaaaaaeaaaaaa
1k7c_A_1691k7c   A175187SIYETLGNATVNSHHHHHH-HHHHHHaaaaaaeaaaaaa
1m6k_A_1171m6k   A122134EITQKIGLNKIKNHHHHHH-HHHHHHaaaaaaeaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1exn_A_2621exn   A     MSESELENOMETHIONINE L - 262
1exn_A_2621exn   A     MSESELENOMETHIONINE C - 266
1exn_A_2621exn   A     MSESELENOMETHIONINE I - 270
1exn_A_2621exn   A     MSESELENOMETHIONINE F - 281
1exn_A_2621exn   A     MSESELENOMETHIONINE I - 285
1k38_A_1171k38   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 117
1k38_A_1171k38   A     KCXLYSINE NZ-CARBOXYLIC ACID Y - 120
1k38_A_1171k38   A     KCXLYSINE NZ-CARBOXYLIC ACID E - 121
1k7c_A_1691k7c   A     NAGN-ACETYL-D-GLUCOSAMINE N - 182
1k7c_A_1691k7c   A     NAGN-ACETYL-D-GLUCOSAMINE A - 183
1k7c_A_1691k7c   A     NAGN-ACETYL-D-GLUCOSAMINE N - 186
1m6k_A_1171m6k   A     MPD2-METHYL-2,4-PENTANEDIOL V - 117
1m6k_A_1171m6k   A     MPD2-METHYL-2,4-PENTANEDIOL W - 118
1m6k_A_1171m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 120
1m6k_A_1171m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID Q - 121
1m6k_A_1171m6k   A     MPD2-METHYL-2,4-PENTANEDIOL E - 122
1m6k_A_1171m6k   A     MPD2-METHYL-2,4-PENTANEDIOL I - 123
1m6k_A_1171m6k   A     MPD2-METHYL-2,4-PENTANEDIOL K - 126

Clusters included in this Subclass
CLUSTER: HH.2.73