ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.12

Subclass Accession number: 8894
Subclass: 2.1.12

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 12.9 +/- 16.4
Average RMSD (Å) : 0.442 +/- 0.151

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	pXXXXX
(φψ)-conformation:	aappaa

Pattern:	x	[degnr]	x	[LMVY]	[aekrst]	x	[afiklt]	x	x	x	x	[kqrs]
Conservation:	-1.227	0.120	-0.438	2.458	0.390	-0.588	-0.282	-0.318	-0.490	-0.246	-0.708	1.329

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a41_*_288	1a41	-	289	300	LDVVSKTTFDEF	HHHHTT--HHHH	aaaaaaxxaaaa
1a4e_A_459	1a4e	A	468	479	GIHVEGACPQIQ	HHHHTTS-HHHH	aaaaaaxpaaaa
1dgf_A_453	1dgf	A	464	475	AGHLKDAQIFIQ	HHHHTTS-HHHH	aaaaaaxpaaaa
1e93_A_431	1e93	A	442	453	AGELSQASKETQ	HHHHTTS-HHHH	aaaaaaxxaaaa
1f7l_A_32	1f7l	A	35	46	LDQYYELSEKRK	HHHHTTS-HHHH	aaaaaaxxaaaa
1kiy_A_126	1kiy	A	136	147	PNVLRHFGPFCS	HHHHTTS-HHHH	aaaaaabxaaaa
1knx_A_58	1knx	A	61	72	FGFLSQKTLVEQ	HHHHTTS-HHHH	aaaaaNxxaaaa
1m1n_A_6	1m1n	A	14	25	QEVLEVYPEKAR	HHHHTTS-HHHH	aaaaaaxpaaaa
1m7s_A_450	1m7s	A	461	472	GESLADTLTESK	HHHHTTS-HHHH	aaaaaaxpaaaa
1pmn_A_284	1pmn	A	284	295	PEFMKKLQPTVR	HHHHHTS-HHHH	aaaaaaxxaaaa
1qgu_A_3	1qgu	A	13	24	QEVLEVFPETAR	HHHHTTS-HHHH	aaaaaaxpaaaa
1qr0_A_14	1qr0	A	18	29	ERFMTFISPEKR	HHHHTTS-HHHH	aaaaaaxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dgf_A_453	1dgf	A	ACTACETATE ION	H - 466
1f7l_A_32	1f7l	A	COACOENZYME A	E - 48
1f7l_A_32	1f7l	A	COACOENZYME A	F - 49
1f7l_A_32	1f7l	A	COACOENZYME A	G - 52
1f7l_A_32	1f7l	A	COACOENZYME A	R - 53
1f7l_A_32	1f7l	A	CACALCIUM ION	F - 54
1f7l_A_32	1f7l	A	CACALCIUM ION	E - 58
1f7l_A_32	1f7l	A	CACALCIUM ION	K - 62
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	P - 126
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	W - 127
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	W - 128
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	L - 130
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	V - 131
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	N - 132
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	F - 135
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	I - 151
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	T - 154
1kiy_A_126	1kiy	A	EDO1,2-ETHANEDIOL	L - 155
1qr0_A_14	1qr0	A	COACOENZYME A	K - 28
1qr0_A_14	1qr0	A	COACOENZYME A	K - 31

Clusters included in this Subclass

CLUSTER: HH.3.45

CLUSTER: HH.4.52

CLUSTER: HH.5.16