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Information on SUBCLASS 2.1.16
Subclass Accession number: 8898
Subclass: 2.1.16 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 11.9 +/- 14.0
Average RMSD (Å) : 0.514 +/- 0.195

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXhppX
(φψ)-conformation: aappaa
Pattern: xx[dgq][AIKMT][HLMV][DNPST][AEKR]xxxxxxx
Conservation:-0.460-1.2620.371-0.3361.4751.1881.816-0.856-0.602-1.086-0.2840.3740.700-1.037
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gox_*_81gox   -1326AKQKLPKMVYDYYAHHHHS-HHHHHHHHaaaaxxaaaaaaaa
1k28_A_2621k28   A265278VWQAVNRSRQMALEHHHHS-HHHHHHHHaaaaxpaaaaaaaa
1k92_A_2941k92   A307320LTGIHNEDTIEQYHHHHHS-HHHHHHHHaaaabxaaaaaaaa
1kbi_A_1251kbi   A132145ASQTLTKQAWAYYSHHHHS-HHHHHHHHaaaaxxaaaaaaaa
1kor_A_2731kor   A286299ESLTLDREVLHQRDHHHHS-HHHHHHHHaaaaxxaaaaaaaa
1r2f_A_1791r2f   A206219ALQKLSAIEREELKHHHTS-HHHHHHHHaaaabxaaaaaaaa
2dpm_A_1082dpm   A108121RIDMMSEVQRAARIHHHHS-HHHHHHHHaaaaxxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gox_*_81gox   *     FMNFLAVIN MONONUCLEOTIDE Y - 24
1gox_*_81gox   *     FMNFLAVIN MONONUCLEOTIDE Y - 25
1gox_*_81gox   *     FMNFLAVIN MONONUCLEOTIDE A - 26
1kbi_A_1251kbi   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 139
1kbi_A_1251kbi   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 143
1kbi_A_1251kbi   A     FMNFLAVIN MONONUCLEOTIDE Y - 143
1kbi_A_1251kbi   A     FMNFLAVIN MONONUCLEOTIDE Y - 144
1kbi_A_1251kbi   A     FMNFLAVIN MONONUCLEOTIDE S - 145
1kor_A_2731kor   A     ARGARGININE Y - 310
1r2f_A_1791r2f   A     FEFE (III) ION I - 188
1r2f_A_1791r2f   A     FEFE (III) ION D - 191
1r2f_A_1791r2f   A     FEFE (III) ION E - 192
1r2f_A_1791r2f   A     FEFE (III) ION H - 195
1r2f_A_1791r2f   A     FEFE (III) ION G - 196
2dpm_A_1082dpm   A     HGMERCURY (II) ION I - 121
2dpm_A_1082dpm   A     HGMERCURY (II) ION L - 122
2dpm_A_1082dpm   A     HGMERCURY (II) ION L - 125

Clusters included in this Subclass
CLUSTER: HH.2.71