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Information on SUBCLASS 2.2.8
Subclass Accession number: 8924
Subclass: 2.2.8 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 14.3 +/- 14.1
Average RMSD (Å) : 0.675 +/- 0.377

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XhGppp
(φψ)-conformation: aalpaa
Pattern: xxxxx[CKM][AL]xx[GLPT][GK][DQT]xx[AL]xxx[FHL]x[EQT]
Conservation:-0.160-0.466-0.773-0.9270.1660.1951.4340.380-1.157-1.3102.4231.083-0.773-0.3131.522-0.260-1.157-0.5800.205-0.4840.951
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d8w_A_3651d8w   A365385TAELRKLEAPGDYTARLALLEHHHHHHHHTTT-HHHHHHHHHaaaaaaaaaavxaaaaaaaaa
1ixm_A_481ixm   A6282AKHESKLSNLKTPHLAFDFLTHHHHHHHHTTT-HHHHHHHHHaaaaaaaaaalbaaaaaaaaa
1p4d_A_881p4d   A88108KSVSMMAMLGGDKRLIDAHNQHHHHHHHHTS--THHHHHHHHaaaaaaaaaaUxaaaaaaaaa
3ygs_P_703ygs   P7292PLFISCLEDTGQDMLASFLRTHHHHHHHHTTT-HHHHHHHHHaaaaaaaaaavxaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d8w_A_3651d8w   A     MSESELENOMETHIONINE E - 372
1d8w_A_3651d8w   A     MSESELENOMETHIONINE Y - 377
1d8w_A_3651d8w   A     MSESELENOMETHIONINE R - 380
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL K - 100
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL R - 101
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL L - 102
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL I - 103
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL D - 104
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL A - 105
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL N - 107
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL Q - 108
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL V - 110
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL D - 111
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL F - 112
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL V - 114
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL R - 115
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL Q - 116
1p4d_A_881p4d   A     EGLETHYLENE GLYCOL E - 118

Clusters included in this Subclass
CLUSTER: HH.3.164
CLUSTER: HH.5.152