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Information on SUBCLASS 2.2.16
Subclass Accession number: 8932
Subclass: 2.2.16 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 5.6 +/- 11.1
Average RMSD (Å) : 0.433 +/- 0.115

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXXXh
(φψ)-conformation: aalpaa
Pattern: [GKS][LT][LVW][MWY][AGQ][FKT][DSV]xx[LW][GIV]x
Conservation:0.2511.0210.2511.880-0.020-0.699-0.699-1.106-1.3781.354-0.428-0.428
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1iib_A_811iib   A8192SLLYGKVDGLGVHHHHHTT-HHHHaaaaaalxaaaa
1l0l_K_81l0l   K3142GLVWATDWRLILHHHHHHT-HHHHaaaaaalpaaaa
1m6k_A_1081m6k   A109120KTWMQFSVVWVSHHHHHTT-HHHHaaaaaalxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID W - 111
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID M - 112
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID F - 114
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL F - 114
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 115
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL S - 115
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 116
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 117
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL V - 117
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL W - 118
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 120
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID Q - 121
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL E - 122
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL I - 123
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL K - 126

Clusters included in this Subclass
CLUSTER: HH.2.165