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Information on SUBCLASS 2.3.4
Subclass Accession number: 8938
Subclass: 2.3.4 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 11.9 +/- 15.5
Average RMSD (Å) : 0.771 +/- 0.189

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 0-45 rho (°): 315-360
Consensus Sequence: pXhpXX
(φψ)-conformation: aabpaa
Pattern: x[aflmvw][dekrs][NSTV]x[ily][DQRT]xx[dhrst][AFIW]x
Conservation:-0.021-0.551-0.2221.329-0.9000.6542.025-0.951-1.211-0.2960.805-0.661
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cbg_*_4101cbg   -410421LQESLLDTPRIDHHHHH--HHHHHaaaaaxxaaaaa
1ceo_*_221ceo   -2435HFDTFITEKDIEHHHHHS-HHHHHaaaaabbaaaaa
1dix_A_1081dix   A117128DLKNQIDLLSILHHHTT--HHHHHaaaaabxaaaaa
1h4p_A_991h4p   A109120HWSTFYQEQDFAHHHHHS-HHHHHaaaaabbaaaaa
1uca_A_981uca   A107118DMRNNYDIIGALHHHHH--HHHHHaaaaabxaaaaa
1uqu_A_4201uqu   A432443DVIVKNDINHWQHHHHHS-HHHHHaaaaabxaaaaa
4ubp_C_3304ubp   C335346FADSRIRPETIAHHHHHS-HHHHHaaaaabbaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h4p_A_991h4p   A     NAGN-ACETYL-D-GLUCOSAMINE E - 116
1h4p_A_991h4p   A     GOLGLYCEROL Q - 117
1h4p_A_991h4p   A     GOLGLYCEROL D - 118
1h4p_A_991h4p   A     GOLGLYCEROL N - 121
1h4p_A_991h4p   A     GOLGLYCEROL I - 122
4ubp_C_3304ubp   C     HAEACETOHYDROXAMIC ACID R - 339
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h4p_A_991h4p   A BC1NAG BINDING SITE FOR CHAIN AE - 116
1h4p_A_991h4p   A AC8GOL BINDING SITE FOR CHAIN BQ - 117
1h4p_A_991h4p   A AC6GOL BINDING SITE FOR CHAIN AN - 121

Clusters included in this Subclass
CLUSTER: HH.1.66
CLUSTER: HH.2.101
CLUSTER: HH.3.184