Logo
Information on SUBCLASS 2.3.9
Subclass Accession number: 8943
Subclass: 2.3.9 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 5.0 +/- 8.0
Average RMSD (Å) : 0.600 +/- 0.183

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXXXXp
(φψ)-conformation: aabpaa
Pattern: xx[DET]xxxxx[DPST]x[ENR][EFKQ][AIKV]xxxxxx[ELM]
Conservation:0.373-1.6982.254-0.648-0.9350.020-0.458-0.8390.688-0.9352.1200.2110.0200.497-0.7440.5270.286-1.2210.1150.368
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fgj_A_3471fgj   A357376VLTCTQCHSERFARSYLDLMHHHHTTTS-HHHHHHHHHHHaaaaaaaxxaaaaaaaaaaa
1i39_A_661i39   A6988LDERMAAKTINEILKECYAEHHHHTTTS-HHHHHHHHHHHaaaaaaabxaaaaaaaaaaa
1luc_B_2361luc   B251270VRESYSNTDFEQKMGELLSEHHHH-TTS-HHHHHHHHHHHaaaaaaabxaaaaaaaaaaa
1pkl_A_2621pkl   A262281RGDLGVEIPAEKVVVAQKILHHHHTTTS-HHHHHHHHHHHaaaaaaabwaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 353
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 356
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 359
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 360
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 361
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 362
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 363
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 364
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 368
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 369
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 372
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 373
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 376
1fgj_A_3471fgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 377
1luc_B_2361luc   B     MGMAGNESIUM ION E - 237
1luc_B_2361luc   B     EDO1,2-ETHANEDIOL A - 238
1luc_B_2361luc   B     EDO1,2-ETHANEDIOL A - 239
1luc_B_2361luc   B     EDO1,2-ETHANEDIOL E - 242
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1pkl_A_2621pkl   A DIVDIVALENT CATION BINDING SITE, BY ANALOGY WITH OTHER CRYSTAL STRUCTURESD - 264

Clusters included in this Subclass
CLUSTER: HH.4.172
CLUSTER: HH.6.70