Information on SUBCLASS 2.8.1 |
Subclass Accession number: 8968
Subclass: 2.8.1 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 31.4 +/- 26.4 Average RMSD (Å) : 0.450 +/- 0.084 Consensus geometry
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Consensus Sequence: | XhGphp |
(φψ)-conformation: | aagbaa |
Pattern: | [ilv] | [nv] | [fkq] | [AIY] | [G] | [ST] | [flv] | [dnst] | [AE] | [stv] | x | [DEGK] | [an] | [aimw] |
Conservation: | -0.288 | -0.440 | -0.624 | -0.184 | 2.977 | 0.972 | -0.450 | -0.536 | 0.814 | -0.382 | -0.380 | -0.112 | -0.459 | -0.908 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1iyx_A_340 | 1iyx | A | 340 | 353 | VNQIGTLTETFEAI | HHHH-SHHHHHHHH | aaaagbaaaaaaaa |
1j11_A_197 | 1j11 | A | 208 | 221 | LNKYGSLNEVNKAW | HHHHSSHHHHHHHH | aaaagbaaaaaaaa |
1nj4_A_112 | 1nj4 | A | 120 | 133 | DFAAGSQDAFVGLM | HHHHSSHHHHHHHH | aaaagbaaaaaaaa |
1one_A_346 | 1one | A | 346 | 359 | VNQIGTLSESIKAA | HHHHS-HHHHHHHH | aaaagbaaaaaaaa |
1pdz_*_345 | 1pdz | - | 345 | 358 | VNQIGSVTESIDAH | HHHH-SHHHHHHHH | aaaagbaaaaaaaa |
1uet_A_172 | 1uet | A | 179 | 192 | IVFYGSFLETVKNA | HHHHSSHHHHHHHH | aaaagbaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1iyx_A_340 | 1iyx | A | CRYPROPANE-1,2,3-TRIOL | T - 345 |
1iyx_A_340 | 1iyx | A | CRYPROPANE-1,2,3-TRIOL | T - 347 |
1iyx_A_340 | 1iyx | A | CRYPROPANE-1,2,3-TRIOL | E - 348 |
1iyx_A_340 | 1iyx | A | CRYPROPANE-1,2,3-TRIOL | E - 351 |
1one_A_346 | 1one | A | MGMAGNESIUM ION | Q - 348 |
1one_A_346 | 1one | A | PEPPHOSPHOENOLPYRUVATE | Q - 348 |
1one_A_346 | 1one | A | PAG2-PHOSPHO-D-GLYCERIC ACID | Q - 348 |
1pdz_*_345 | 1pdz | * | PGA2-PHOSPHOGLYCOLIC ACID | Q - 347 |
Clusters included in this Subclass |
CLUSTER: HH.1.54 |